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YBX2 (Y-box binding protein 2)

Identity

Alias_symbol (synonym)MSY2
CSDA3
Contrin
Other aliasCONTRIN
DBPC
HGNC (Hugo) YBX2
LocusID (NCBI) 51087
Atlas_Id 46010
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7191571 and ends at 7197876 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC43 (17q21.31) / YBX2 (17p13.1)PSMD2 (3q27.1) / YBX2 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YBX2   17948
Cards
Entrez_Gene (NCBI)YBX2  51087  Y-box binding protein 2
AliasesCONTRIN; CSDA3; DBPC; MSY2
GeneCards (Weizmann)YBX2
Ensembl hg19 (Hinxton)ENSG00000006047 [Gene_View]  chr17:7191571-7197876 [Contig_View]  YBX2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000006047 [Gene_View]  chr17:7191571-7197876 [Contig_View]  YBX2 [Vega]
ICGC DataPortalENSG00000006047
TCGA cBioPortalYBX2
AceView (NCBI)YBX2
Genatlas (Paris)YBX2
WikiGenes51087
SOURCE (Princeton)YBX2
Genetics Home Reference (NIH)YBX2
Genomic and cartography
GoldenPath hg19 (UCSC)YBX2  -     chr17:7191571-7197876 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YBX2  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblYBX2 - 17p13.1 [CytoView hg19]  YBX2 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIYBX2 [Mapview hg19]  YBX2 [Mapview hg38]
OMIM611447   
Gene and transcription
Genbank (Entrez)AB208818 AF096834 AI805280 AK092747 AK315035
RefSeq transcript (Entrez)NM_015982
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)YBX2
Cluster EST : UnigeneHs.567494 [ NCBI ]
CGAP (NCI)Hs.567494
Alternative Splicing GalleryENSG00000006047
Gene ExpressionYBX2 [ NCBI-GEO ]   YBX2 [ EBI - ARRAY_EXPRESS ]   YBX2 [ SEEK ]   YBX2 [ MEM ]
Gene Expression Viewer (FireBrowse)YBX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51087
GTEX Portal (Tissue expression)YBX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2T7
Splice isoforms : SwissVarQ9Y2T7
PhosPhoSitePlusQ9Y2T7
Domaine pattern : Prosite (Expaxy)COLD_SHOCK (PS00352)   
Domains : Interpro (EBI)Cold-shock_CS    Cold_shock_prot    CSP_DNA-bd    NA-bd_OB-fold   
Domain families : Pfam (Sanger)CSD (PF00313)   
Domain families : Pfam (NCBI)pfam00313   
Domain families : Smart (EMBL)CSP (SM00357)  
Conserved Domain (NCBI)YBX2
DMDM Disease mutations51087
Blocks (Seattle)YBX2
SuperfamilyQ9Y2T7
Human Protein AtlasENSG00000006047
Peptide AtlasQ9Y2T7
HPRD18311
IPIIPI00250153   IPI00556023   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2T7
IntAct (EBI)Q9Y2T7
FunCoupENSG00000006047
BioGRIDYBX2
STRING (EMBL)YBX2
ZODIACYBX2
Ontologies - Pathways
QuickGOQ9Y2T7
Ontology : AmiGODNA binding  RNA binding  nucleus  nucleolus  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  spermatogenesis  translational attenuation  oocyte development  
Ontology : EGO-EBIDNA binding  RNA binding  nucleus  nucleolus  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  spermatogenesis  translational attenuation  oocyte development  
NDEx NetworkYBX2
Atlas of Cancer Signalling NetworkYBX2
Wikipedia pathwaysYBX2
Orthology - Evolution
OrthoDB51087
GeneTree (enSembl)ENSG00000006047
Phylogenetic Trees/Animal Genes : TreeFamYBX2
HOVERGENQ9Y2T7
HOGENOMQ9Y2T7
Homologs : HomoloGeneYBX2
Homology/Alignments : Family Browser (UCSC)YBX2
Gene fusions - Rearrangements
Fusion : MitelmanCCDC43/YBX2 [17q21.31/17p13.1]  [t(17;17)(p13;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYBX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YBX2
dbVarYBX2
ClinVarYBX2
1000_GenomesYBX2 
Exome Variant ServerYBX2
ExAC (Exome Aggregation Consortium)YBX2 (select the gene name)
Genetic variants : HAPMAP51087
Genomic Variants (DGV)YBX2 [DGVbeta]
DECIPHER (Syndromes)17:7191571-7197876  ENSG00000006047
CONAN: Copy Number AnalysisYBX2 
Mutations
ICGC Data PortalYBX2 
TCGA Data PortalYBX2 
Broad Tumor PortalYBX2
OASIS PortalYBX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYBX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYBX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YBX2
DgiDB (Drug Gene Interaction Database)YBX2
DoCM (Curated mutations)YBX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YBX2 (select a term)
intoGenYBX2
Cancer3DYBX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611447   
Orphanet
MedgenYBX2
Genetic Testing Registry YBX2
NextProtQ9Y2T7 [Medical]
TSGene51087
GENETestsYBX2
Huge Navigator YBX2 [HugePedia]
snp3D : Map Gene to Disease51087
BioCentury BCIQYBX2
ClinGenYBX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51087
Chemical/Pharm GKB GenePA142670560
Clinical trialYBX2
Miscellaneous
canSAR (ICR)YBX2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYBX2
EVEXYBX2
GoPubMedYBX2
iHOPYBX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:16 CEST 2017

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