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YDJC (YdjC chitooligosaccharide deacetylase homolog)

Identity

Other alias-
HGNC (Hugo) YDJC
LocusID (NCBI) 150223
Atlas_Id 75806
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21628090 and ends at 21630051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
YDJC (22q11.21) / UBAP2L (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YDJC   27158
Cards
Entrez_Gene (NCBI)YDJC  150223  YdjC chitooligosaccharide deacetylase homolog
Aliases
GeneCards (Weizmann)YDJC
Ensembl hg19 (Hinxton)ENSG00000161179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161179 [Gene_View]  chr22:21628090-21630051 [Contig_View]  YDJC [Vega]
ICGC DataPortalENSG00000161179
TCGA cBioPortalYDJC
AceView (NCBI)YDJC
Genatlas (Paris)YDJC
WikiGenes150223
SOURCE (Princeton)YDJC
Genetics Home Reference (NIH)YDJC
Genomic and cartography
GoldenPath hg38 (UCSC)YDJC  -     chr22:21628090-21630051 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YDJC  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblYDJC - 22q11.21 [CytoView hg19]  YDJC - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIYDJC [Mapview hg19]  YDJC [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017281 BC053663 BC057814 BC096754 BC110075
RefSeq transcript (Entrez)NM_001017964 NM_001017965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YDJC
Cluster EST : UnigeneHs.355952 [ NCBI ]
CGAP (NCI)Hs.355952
Alternative Splicing GalleryENSG00000161179
Gene ExpressionYDJC [ NCBI-GEO ]   YDJC [ EBI - ARRAY_EXPRESS ]   YDJC [ SEEK ]   YDJC [ MEM ]
Gene Expression Viewer (FireBrowse)YDJC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150223
GTEX Portal (Tissue expression)YDJC
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MPS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MPS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MPS7
Splice isoforms : SwissVarA8MPS7
PhosPhoSitePlusA8MPS7
Domains : Interpro (EBI)Glyco_hydro/deAcase_b/a-brl    NODB_dom    YdjC-like   
Domain families : Pfam (Sanger)YdjC (PF04794)   
Domain families : Pfam (NCBI)pfam04794   
Conserved Domain (NCBI)YDJC
DMDM Disease mutations150223
Blocks (Seattle)YDJC
SuperfamilyA8MPS7
Human Protein AtlasENSG00000161179
Peptide AtlasA8MPS7
HPRD18559
IPIIPI00216565   IPI00871920   IPI00604761   
Protein Interaction databases
DIP (DOE-UCLA)A8MPS7
IntAct (EBI)A8MPS7
FunCoupENSG00000161179
BioGRIDYDJC
STRING (EMBL)YDJC
ZODIACYDJC
Ontologies - Pathways
QuickGOA8MPS7
Ontology : AmiGOmagnesium ion binding  carbohydrate metabolic process  hydrolase activity  
Ontology : EGO-EBImagnesium ion binding  carbohydrate metabolic process  hydrolase activity  
NDEx NetworkYDJC
Atlas of Cancer Signalling NetworkYDJC
Wikipedia pathwaysYDJC
Orthology - Evolution
OrthoDB150223
GeneTree (enSembl)ENSG00000161179
Phylogenetic Trees/Animal Genes : TreeFamYDJC
HOVERGENA8MPS7
HOGENOMA8MPS7
Homologs : HomoloGeneYDJC
Homology/Alignments : Family Browser (UCSC)YDJC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYDJC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YDJC
dbVarYDJC
ClinVarYDJC
1000_GenomesYDJC 
Exome Variant ServerYDJC
ExAC (Exome Aggregation Consortium)YDJC (select the gene name)
Genetic variants : HAPMAP150223
Genomic Variants (DGV)YDJC [DGVbeta]
DECIPHERYDJC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYDJC 
Mutations
ICGC Data PortalYDJC 
TCGA Data PortalYDJC 
Broad Tumor PortalYDJC
OASIS PortalYDJC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYDJC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYDJC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YDJC
DgiDB (Drug Gene Interaction Database)YDJC
DoCM (Curated mutations)YDJC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YDJC (select a term)
intoGenYDJC
Cancer3DYDJC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYDJC
Genetic Testing Registry YDJC
NextProtA8MPS7 [Medical]
TSGene150223
GENETestsYDJC
Target ValidationYDJC
Huge Navigator YDJC [HugePedia]
snp3D : Map Gene to Disease150223
BioCentury BCIQYDJC
ClinGenYDJC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150223
Chemical/Pharm GKB GenePA162409362
Clinical trialYDJC
Miscellaneous
canSAR (ICR)YDJC (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYDJC
EVEXYDJC
GoPubMedYDJC
iHOPYDJC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:00 CEST 2017

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