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YEATS4 (YEATS domain containing 4)

Identity

Alias_symbol (synonym)NuBI-1
GAS41
YAF9
HGNC (Hugo) YEATS4
LocusID (NCBI) 8089
Atlas_Id 40686
Location 12q15  [Link to chromosome band 12q15]
Location_base_pair Starts at 69753490 and ends at 69784650 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
YEATS4 (12q15) / ATP23 (12q14.1)YEATS4 (12q15) / EP400 (12q24.33)YEATS4 (12q15) / LYZ (12q15)
YEATS4 (12q15) / MARS (12q13.3)YEATS4 (12q15) / SLC35E3 (12q15)YEATS4 12q15 / EP400 12q24.33
YEATS4 12q15 / LYZ 12q15YEATS4 12q15 / MARS 12q13.3YEATS4 12q15 / SLC35E3 12q15
YEATS4 12q15 / XRCC6BP1 12q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Soft tissue tumors: an overview


External links

Nomenclature
HGNC (Hugo)YEATS4   24859
Cards
Entrez_Gene (NCBI)YEATS4  8089  YEATS domain containing 4
Aliases4930573H17Rik; B230215M10Rik; GAS41; NUBI-1; 
YAF9
GeneCards (Weizmann)YEATS4
Ensembl hg19 (Hinxton)ENSG00000127337 [Gene_View]  chr12:69753490-69784650 [Contig_View]  YEATS4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127337 [Gene_View]  chr12:69753490-69784650 [Contig_View]  YEATS4 [Vega]
ICGC DataPortalENSG00000127337
TCGA cBioPortalYEATS4
AceView (NCBI)YEATS4
Genatlas (Paris)YEATS4
WikiGenes8089
SOURCE (Princeton)YEATS4
Genetics Home Reference (NIH)YEATS4
Genomic and cartography
GoldenPath hg19 (UCSC)YEATS4  -     chr12:69753490-69784650 +  12q15   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YEATS4  -     12q15   [Description]    (hg38-Dec_2013)
EnsemblYEATS4 - 12q15 [CytoView hg19]  YEATS4 - 12q15 [CytoView hg38]
Mapping of homologs : NCBIYEATS4 [Mapview hg19]  YEATS4 [Mapview hg38]
OMIM602116   
Gene and transcription
Genbank (Entrez)AJ245746 AK001413 BC000994 CA775118 CK820576
RefSeq transcript (Entrez)NM_001300950 NM_006530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YEATS4
Cluster EST : UnigeneHs.4029 [ NCBI ]
CGAP (NCI)Hs.4029
Alternative Splicing GalleryENSG00000127337
Gene ExpressionYEATS4 [ NCBI-GEO ]   YEATS4 [ EBI - ARRAY_EXPRESS ]   YEATS4 [ SEEK ]   YEATS4 [ MEM ]
Gene Expression Viewer (FireBrowse)YEATS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8089
GTEX Portal (Tissue expression)YEATS4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95619
Splice isoforms : SwissVarO95619
PhosPhoSitePlusO95619
Domaine pattern : Prosite (Expaxy)YEATS (PS51037)   
Domains : Interpro (EBI)YEATS   
Domain families : Pfam (Sanger)YEATS (PF03366)   
Domain families : Pfam (NCBI)pfam03366   
Conserved Domain (NCBI)YEATS4
DMDM Disease mutations8089
Blocks (Seattle)YEATS4
SuperfamilyO95619
Human Protein AtlasENSG00000127337
Peptide AtlasO95619
HPRD03666
IPIIPI00008536   IPI01021540   IPI01022267   IPI01022432   
Protein Interaction databases
DIP (DOE-UCLA)O95619
IntAct (EBI)O95619
FunCoupENSG00000127337
BioGRIDYEATS4
STRING (EMBL)YEATS4
ZODIACYEATS4
Ontologies - Pathways
QuickGOO95619
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  structural constituent of cytoskeleton  protein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  cytoskeleton organization  mitotic nuclear division  protein C-terminus binding  nuclear matrix  NuA4 histone acetyltransferase complex  regulation of growth  histone H4 acetylation  histone H2A acetylation  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  structural constituent of cytoskeleton  protein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  cytoskeleton organization  mitotic nuclear division  protein C-terminus binding  nuclear matrix  NuA4 histone acetyltransferase complex  regulation of growth  histone H4 acetylation  histone H2A acetylation  positive regulation of transcription, DNA-templated  
NDEx NetworkYEATS4
Atlas of Cancer Signalling NetworkYEATS4
Wikipedia pathwaysYEATS4
Orthology - Evolution
OrthoDB8089
GeneTree (enSembl)ENSG00000127337
Phylogenetic Trees/Animal Genes : TreeFamYEATS4
HOVERGENO95619
HOGENOMO95619
Homologs : HomoloGeneYEATS4
Homology/Alignments : Family Browser (UCSC)YEATS4
Gene fusions - Rearrangements
Fusion : MitelmanYEATS4/EP400 [12q15/12q24.33]  
Fusion : MitelmanYEATS4/MARS [12q15/12q13.3]  [t(12;12)(q13;q15)]  
Fusion : MitelmanYEATS4/XRCC6BP1 [12q15/12q14.1]  [t(12;12)(q14;q15)]  
Fusion: TCGAYEATS4 12q15 EP400 12q24.33 GBM
Fusion: TCGAYEATS4 12q15 LYZ 12q15 BLCA
Fusion: TCGAYEATS4 12q15 MARS 12q13.3 GBM
Fusion: TCGAYEATS4 12q15 SLC35E3 12q15 LUAD
Fusion: TCGAYEATS4 12q15 XRCC6BP1 12q14.1 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYEATS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YEATS4
dbVarYEATS4
ClinVarYEATS4
1000_GenomesYEATS4 
Exome Variant ServerYEATS4
ExAC (Exome Aggregation Consortium)YEATS4 (select the gene name)
Genetic variants : HAPMAP8089
Genomic Variants (DGV)YEATS4 [DGVbeta]
DECIPHER (Syndromes)12:69753490-69784650  ENSG00000127337
CONAN: Copy Number AnalysisYEATS4 
Mutations
ICGC Data PortalYEATS4 
TCGA Data PortalYEATS4 
Broad Tumor PortalYEATS4
OASIS PortalYEATS4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYEATS4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYEATS4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YEATS4
DgiDB (Drug Gene Interaction Database)YEATS4
DoCM (Curated mutations)YEATS4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YEATS4 (select a term)
intoGenYEATS4
Cancer3DYEATS4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602116   
Orphanet
MedgenYEATS4
Genetic Testing Registry YEATS4
NextProtO95619 [Medical]
TSGene8089
GENETestsYEATS4
Huge Navigator YEATS4 [HugePedia]
snp3D : Map Gene to Disease8089
BioCentury BCIQYEATS4
ClinGenYEATS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8089
Chemical/Pharm GKB GenePA134992686
Clinical trialYEATS4
Miscellaneous
canSAR (ICR)YEATS4 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYEATS4
EVEXYEATS4
GoPubMedYEATS4
iHOPYEATS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 21 16:29:52 CET 2017

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