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YIF1B (Yip1 interacting factor homolog B, membrane trafficking protein)

Identity

Alias_namesYip1 interacting factor homolog B (S. cerevisiae)
Alias_symbol (synonym)FinGER8
Other alias
HGNC (Hugo) YIF1B
LocusID (NCBI) 90522
Atlas_Id 75809
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38303560 and ends at 38315805 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACTN4 (19q13.2) / YIF1B (19q13.2)ALCAM (3q13.11) / YIF1B (19q13.2)SAMHD1 (20q11.23) / YIF1B (19q13.2)
YIF1B (19q13.2) / YIF1B (19q13.2)ALCAM YIF1BSAMHD1 YIF1B
ACTN4 YIF1B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIF1B   30511
Cards
Entrez_Gene (NCBI)YIF1B  90522  Yip1 interacting factor homolog B, membrane trafficking protein
AliasesFinGER8
GeneCards (Weizmann)YIF1B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:38303560-38315805 [Contig_View]  YIF1B [Vega]
TCGA cBioPortalYIF1B
AceView (NCBI)YIF1B
Genatlas (Paris)YIF1B
WikiGenes90522
SOURCE (Princeton)YIF1B
Genetics Home Reference (NIH)YIF1B
Genomic and cartography
GoldenPath hg38 (UCSC)YIF1B  -     chr19:38303560-38315805 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIF1B  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblYIF1B - 19q13.2 [CytoView hg19]  YIF1B - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIYIF1B [Mapview hg19]  YIF1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF258578 AK027130 AK304479 AL833382 AW630507
RefSeq transcript (Entrez)NM_001013617 NM_001031731 NM_001039671 NM_001039672 NM_001039673 NM_001145461 NM_001145462 NM_001145463 NM_033557
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIF1B
Cluster EST : UnigeneHs.280741 [ NCBI ]
CGAP (NCI)Hs.280741
Gene ExpressionYIF1B [ NCBI-GEO ]   YIF1B [ EBI - ARRAY_EXPRESS ]   YIF1B [ SEEK ]   YIF1B [ MEM ]
Gene Expression Viewer (FireBrowse)YIF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90522
GTEX Portal (Tissue expression)YIF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BJH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BJH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BJH7
Splice isoforms : SwissVarQ5BJH7
PhosPhoSitePlusQ5BJH7
Domains : Interpro (EBI)Yif1_fam   
Domain families : Pfam (Sanger)YIF1 (PF03878)   
Domain families : Pfam (NCBI)pfam03878   
Conserved Domain (NCBI)YIF1B
DMDM Disease mutations90522
Blocks (Seattle)YIF1B
SuperfamilyQ5BJH7
Peptide AtlasQ5BJH7
HPRD11277
IPIIPI00736813   IPI00395508   IPI00063544   IPI00869035   IPI00060144   IPI00735552   IPI00923592   
Protein Interaction databases
DIP (DOE-UCLA)Q5BJH7
IntAct (EBI)Q5BJH7
BioGRIDYIF1B
STRING (EMBL)YIF1B
ZODIACYIF1B
Ontologies - Pathways
QuickGOQ5BJH7
Ontology : AmiGOendoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  ER to Golgi vesicle-mediated transport  ER to Golgi transport vesicle  integral component of Golgi membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  ER to Golgi vesicle-mediated transport  ER to Golgi transport vesicle  integral component of Golgi membrane  
NDEx NetworkYIF1B
Atlas of Cancer Signalling NetworkYIF1B
Wikipedia pathwaysYIF1B
Orthology - Evolution
OrthoDB90522
Phylogenetic Trees/Animal Genes : TreeFamYIF1B
HOVERGENQ5BJH7
HOGENOMQ5BJH7
Homologs : HomoloGeneYIF1B
Homology/Alignments : Family Browser (UCSC)YIF1B
Gene fusions - Rearrangements
Fusion: TCGAALCAM YIF1B
Fusion: TCGASAMHD1 YIF1B
Fusion: TCGAACTN4 YIF1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIF1B
dbVarYIF1B
ClinVarYIF1B
1000_GenomesYIF1B 
Exome Variant ServerYIF1B
ExAC (Exome Aggregation Consortium)YIF1B (select the gene name)
Genetic variants : HAPMAP90522
Genomic Variants (DGV)YIF1B [DGVbeta]
DECIPHERYIF1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIF1B 
Mutations
ICGC Data PortalYIF1B 
TCGA Data PortalYIF1B 
Broad Tumor PortalYIF1B
OASIS PortalYIF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIF1B
DgiDB (Drug Gene Interaction Database)YIF1B
DoCM (Curated mutations)YIF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIF1B (select a term)
intoGenYIF1B
Cancer3DYIF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYIF1B
Genetic Testing Registry YIF1B
NextProtQ5BJH7 [Medical]
TSGene90522
GENETestsYIF1B
Target ValidationYIF1B
Huge Navigator YIF1B [HugePedia]
snp3D : Map Gene to Disease90522
BioCentury BCIQYIF1B
ClinGenYIF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90522
Chemical/Pharm GKB GenePA142670561
Clinical trialYIF1B
Miscellaneous
canSAR (ICR)YIF1B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIF1B
EVEXYIF1B
GoPubMedYIF1B
iHOPYIF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:17 CEST 2017

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