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YIPF1 (Yip1 domain family member 1)

Identity

Alias_namesYip1 domain family, member 1
Alias_symbol (synonym)DJ167A19.1
FinGER1
Other alias
HGNC (Hugo) YIPF1
LocusID (NCBI) 54432
Atlas_Id 75810
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53851719 and ends at 53889814 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TBC1D2B (15q24.3) / YIPF1 (1p32.3)YIPF1 (1p32.3) / MRPL15 (8q11.23)YIPF1 (1p32.3) / TMEM59 (1p32.3)
YIPF1 (1p32.3) / YTHDF2 (1p35.3)YIPF1 MRPL15YIPF1 YTHDF2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF1   25231
Cards
Entrez_Gene (NCBI)YIPF1  54432  Yip1 domain family member 1
AliasesDJ167A19.1; FinGER1
GeneCards (Weizmann)YIPF1
Ensembl hg19 (Hinxton)ENSG00000058799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000058799 [Gene_View]  chr1:53851719-53889814 [Contig_View]  YIPF1 [Vega]
ICGC DataPortalENSG00000058799
TCGA cBioPortalYIPF1
AceView (NCBI)YIPF1
Genatlas (Paris)YIPF1
WikiGenes54432
SOURCE (Princeton)YIPF1
Genetics Home Reference (NIH)YIPF1
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF1  -     chr1:53851719-53889814 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF1  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblYIPF1 - 1p32.3 [CytoView hg19]  YIPF1 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIYIPF1 [Mapview hg19]  YIPF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA405430 AK000823 AK300240 AK315183 AL596480
RefSeq transcript (Entrez)NM_018982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIPF1
Cluster EST : UnigeneHs.11923 [ NCBI ]
CGAP (NCI)Hs.11923
Alternative Splicing GalleryENSG00000058799
Gene ExpressionYIPF1 [ NCBI-GEO ]   YIPF1 [ EBI - ARRAY_EXPRESS ]   YIPF1 [ SEEK ]   YIPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54432
GTEX Portal (Tissue expression)YIPF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y548   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y548  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y548
Splice isoforms : SwissVarQ9Y548
PhosPhoSitePlusQ9Y548
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF1
DMDM Disease mutations54432
Blocks (Seattle)YIPF1
SuperfamilyQ9Y548
Human Protein AtlasENSG00000058799
Peptide AtlasQ9Y548
HPRD13147
IPIIPI01012314   IPI00643507   IPI00177912   IPI01011242   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y548
IntAct (EBI)Q9Y548
FunCoupENSG00000058799
BioGRIDYIPF1
STRING (EMBL)YIPF1
ZODIACYIPF1
Ontologies - Pathways
QuickGOQ9Y548
Ontology : AmiGOprotein binding  Golgi apparatus  integral component of membrane  Rab GTPase binding  transport vesicle  
Ontology : EGO-EBIprotein binding  Golgi apparatus  integral component of membrane  Rab GTPase binding  transport vesicle  
NDEx NetworkYIPF1
Atlas of Cancer Signalling NetworkYIPF1
Wikipedia pathwaysYIPF1
Orthology - Evolution
OrthoDB54432
GeneTree (enSembl)ENSG00000058799
Phylogenetic Trees/Animal Genes : TreeFamYIPF1
HOVERGENQ9Y548
HOGENOMQ9Y548
Homologs : HomoloGeneYIPF1
Homology/Alignments : Family Browser (UCSC)YIPF1
Gene fusions - Rearrangements
Fusion: TCGAYIPF1 MRPL15
Fusion: TCGAYIPF1 YTHDF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF1
dbVarYIPF1
ClinVarYIPF1
1000_GenomesYIPF1 
Exome Variant ServerYIPF1
ExAC (Exome Aggregation Consortium)YIPF1 (select the gene name)
Genetic variants : HAPMAP54432
Genomic Variants (DGV)YIPF1 [DGVbeta]
DECIPHERYIPF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF1 
Mutations
ICGC Data PortalYIPF1 
TCGA Data PortalYIPF1 
Broad Tumor PortalYIPF1
OASIS PortalYIPF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF1
DgiDB (Drug Gene Interaction Database)YIPF1
DoCM (Curated mutations)YIPF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF1 (select a term)
intoGenYIPF1
Cancer3DYIPF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYIPF1
Genetic Testing Registry YIPF1
NextProtQ9Y548 [Medical]
TSGene54432
GENETestsYIPF1
Target ValidationYIPF1
Huge Navigator YIPF1 [HugePedia]
snp3D : Map Gene to Disease54432
BioCentury BCIQYIPF1
ClinGenYIPF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54432
Chemical/Pharm GKB GenePA142670555
Clinical trialYIPF1
Miscellaneous
canSAR (ICR)YIPF1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF1
EVEXYIPF1
GoPubMedYIPF1
iHOPYIPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:17 CEST 2017

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