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YIPF2 (Yip1 domain family member 2)

Identity

Alias_namesYip1 domain family, member 2
Alias_symbol (synonym)MGC3262
FinGER2
Other alias
HGNC (Hugo) YIPF2
LocusID (NCBI) 78992
Atlas_Id 75811
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10922768 and ends at 10928667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
YIPF2 (19p13.2) / HLA-H (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF2   28476
Cards
Entrez_Gene (NCBI)YIPF2  78992  Yip1 domain family member 2
AliasesFinGER2
GeneCards (Weizmann)YIPF2
Ensembl hg19 (Hinxton)ENSG00000130733 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130733 [Gene_View]  chr19:10922768-10928667 [Contig_View]  YIPF2 [Vega]
ICGC DataPortalENSG00000130733
TCGA cBioPortalYIPF2
AceView (NCBI)YIPF2
Genatlas (Paris)YIPF2
WikiGenes78992
SOURCE (Princeton)YIPF2
Genetics Home Reference (NIH)YIPF2
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF2  -     chr19:10922768-10928667 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF2  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblYIPF2 - 19p13.2 [CytoView hg19]  YIPF2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIYIPF2 [Mapview hg19]  YIPF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AM392632 BC000056 BC013014 BE275116 BM554546
RefSeq transcript (Entrez)NM_001321439 NM_001321440 NM_024029
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIPF2
Cluster EST : UnigeneHs.720136 [ NCBI ]
CGAP (NCI)Hs.720136
Alternative Splicing GalleryENSG00000130733
Gene ExpressionYIPF2 [ NCBI-GEO ]   YIPF2 [ EBI - ARRAY_EXPRESS ]   YIPF2 [ SEEK ]   YIPF2 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78992
GTEX Portal (Tissue expression)YIPF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWQ6
Splice isoforms : SwissVarQ9BWQ6
PhosPhoSitePlusQ9BWQ6
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF2
DMDM Disease mutations78992
Blocks (Seattle)YIPF2
SuperfamilyQ9BWQ6
Human Protein AtlasENSG00000130733
Peptide AtlasQ9BWQ6
HPRD11332
IPIIPI00031493   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWQ6
IntAct (EBI)Q9BWQ6
FunCoupENSG00000130733
BioGRIDYIPF2
STRING (EMBL)YIPF2
ZODIACYIPF2
Ontologies - Pathways
QuickGOQ9BWQ6
Ontology : AmiGOprotein binding  Golgi apparatus  integral component of membrane  Rab GTPase binding  transport vesicle  
Ontology : EGO-EBIprotein binding  Golgi apparatus  integral component of membrane  Rab GTPase binding  transport vesicle  
NDEx NetworkYIPF2
Atlas of Cancer Signalling NetworkYIPF2
Wikipedia pathwaysYIPF2
Orthology - Evolution
OrthoDB78992
GeneTree (enSembl)ENSG00000130733
Phylogenetic Trees/Animal Genes : TreeFamYIPF2
HOVERGENQ9BWQ6
HOGENOMQ9BWQ6
Homologs : HomoloGeneYIPF2
Homology/Alignments : Family Browser (UCSC)YIPF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF2
dbVarYIPF2
ClinVarYIPF2
1000_GenomesYIPF2 
Exome Variant ServerYIPF2
ExAC (Exome Aggregation Consortium)YIPF2 (select the gene name)
Genetic variants : HAPMAP78992
Genomic Variants (DGV)YIPF2 [DGVbeta]
DECIPHERYIPF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF2 
Mutations
ICGC Data PortalYIPF2 
TCGA Data PortalYIPF2 
Broad Tumor PortalYIPF2
OASIS PortalYIPF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF2
DgiDB (Drug Gene Interaction Database)YIPF2
DoCM (Curated mutations)YIPF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF2 (select a term)
intoGenYIPF2
Cancer3DYIPF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYIPF2
Genetic Testing Registry YIPF2
NextProtQ9BWQ6 [Medical]
TSGene78992
GENETestsYIPF2
Target ValidationYIPF2
Huge Navigator YIPF2 [HugePedia]
snp3D : Map Gene to Disease78992
BioCentury BCIQYIPF2
ClinGenYIPF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78992
Chemical/Pharm GKB GenePA142670556
Clinical trialYIPF2
Miscellaneous
canSAR (ICR)YIPF2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF2
EVEXYIPF2
GoPubMedYIPF2
iHOPYIPF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:01 CEST 2017

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