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YIPF3 (Yip1 domain family member 3)

Identity

Alias_namesC6orf109
chromosome 6 open reading frame 109
Yip1 domain family, member 3
Alias_symbol (synonym)DKFZp566C243
KLIP1
dJ337H4.3
FinGER3
Other alias
HGNC (Hugo) YIPF3
LocusID (NCBI) 25844
Atlas_Id 75812
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43511827 and ends at 43516990 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ERI3 (1p34.1) / YIPF3 (6p21.1)SGTA (19p13.3) / YIPF3 (6p21.1)YIPF3 (6p21.1) / FAM129A (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF3   21023
Cards
Entrez_Gene (NCBI)YIPF3  25844  Yip1 domain family member 3
AliasesC6orf109; FinGER3; KLIP1; dJ337H4.3
GeneCards (Weizmann)YIPF3
Ensembl hg19 (Hinxton)ENSG00000137207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137207 [Gene_View]  ENSG00000137207 [Sequence]  chr6:43511827-43516990 [Contig_View]  YIPF3 [Vega]
ICGC DataPortalENSG00000137207
TCGA cBioPortalYIPF3
AceView (NCBI)YIPF3
Genatlas (Paris)YIPF3
WikiGenes25844
SOURCE (Princeton)YIPF3
Genetics Home Reference (NIH)YIPF3
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF3  -     chr6:43511827-43516990 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF3  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblYIPF3 - 6p21.1 [CytoView hg19]  YIPF3 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIYIPF3 [Mapview hg19]  YIPF3 [Mapview hg38]
OMIM609775   
Gene and transcription
Genbank (Entrez)AF162672 AK000946 AK021433 AK021655 AK022757
RefSeq transcript (Entrez)NM_015388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIPF3
Cluster EST : UnigeneHs.440950 [ NCBI ]
CGAP (NCI)Hs.440950
Alternative Splicing GalleryENSG00000137207
Gene ExpressionYIPF3 [ NCBI-GEO ]   YIPF3 [ EBI - ARRAY_EXPRESS ]   YIPF3 [ SEEK ]   YIPF3 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25844
GTEX Portal (Tissue expression)YIPF3
Human Protein AtlasENSG00000137207-YIPF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZM5
Splice isoforms : SwissVarQ9GZM5
PhosPhoSitePlusQ9GZM5
Domains : Interpro (EBI)YIPF3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)YIPF3
DMDM Disease mutations25844
Blocks (Seattle)YIPF3
SuperfamilyQ9GZM5
Human Protein Atlas [tissue]ENSG00000137207-YIPF3 [tissue]
Peptide AtlasQ9GZM5
HPRD09852
IPIIPI00329688   IPI00647177   IPI00647627   IPI00964190   IPI00968007   IPI00963891   IPI00967180   IPI00965609   IPI00965871   IPI01013772   IPI00967418   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZM5
IntAct (EBI)Q9GZM5
FunCoupENSG00000137207
BioGRIDYIPF3
STRING (EMBL)YIPF3
ZODIACYIPF3
Ontologies - Pathways
QuickGOQ9GZM5
Ontology : AmiGOprotein binding  Golgi apparatus  plasma membrane  integral component of membrane  transport vesicle  cell differentiation  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  Golgi apparatus  plasma membrane  integral component of membrane  transport vesicle  cell differentiation  intracellular membrane-bounded organelle  
NDEx NetworkYIPF3
Atlas of Cancer Signalling NetworkYIPF3
Wikipedia pathwaysYIPF3
Orthology - Evolution
OrthoDB25844
GeneTree (enSembl)ENSG00000137207
Phylogenetic Trees/Animal Genes : TreeFamYIPF3
HOVERGENQ9GZM5
HOGENOMQ9GZM5
Homologs : HomoloGeneYIPF3
Homology/Alignments : Family Browser (UCSC)YIPF3
Gene fusions - Rearrangements
Fusion : QuiverYIPF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF3
dbVarYIPF3
ClinVarYIPF3
1000_GenomesYIPF3 
Exome Variant ServerYIPF3
ExAC (Exome Aggregation Consortium)ENSG00000137207
GNOMAD BrowserENSG00000137207
Varsome BrowserYIPF3
Genetic variants : HAPMAP25844
Genomic Variants (DGV)YIPF3 [DGVbeta]
DECIPHERYIPF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF3 
Mutations
ICGC Data PortalYIPF3 
TCGA Data PortalYIPF3 
Broad Tumor PortalYIPF3
OASIS PortalYIPF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF3
DgiDB (Drug Gene Interaction Database)YIPF3
DoCM (Curated mutations)YIPF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF3 (select a term)
intoGenYIPF3
Cancer3DYIPF3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609775   
Orphanet
DisGeNETYIPF3
MedgenYIPF3
Genetic Testing Registry YIPF3
NextProtQ9GZM5 [Medical]
TSGene25844
GENETestsYIPF3
Target ValidationYIPF3
Huge Navigator YIPF3 [HugePedia]
snp3D : Map Gene to Disease25844
BioCentury BCIQYIPF3
ClinGenYIPF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25844
Chemical/Pharm GKB GenePA134946615
Clinical trialYIPF3
Miscellaneous
canSAR (ICR)YIPF3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF3
EVEXYIPF3
GoPubMedYIPF3
iHOPYIPF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:38:42 CEST 2018

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