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YIPF4 (Yip1 domain family member 4)

Identity

Alias_namesYip1 domain family, member 4
Alias_symbol (synonym)MGC11061
FinGER4
Other aliasNbla11189
HGNC (Hugo) YIPF4
LocusID (NCBI) 84272
Atlas_Id 75813
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 32277889 and ends at 32306589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BIRC6 (2p22.3) / YIPF4 (2p22.3)FN1 (2q35) / YIPF4 (2p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF4   28145
Cards
Entrez_Gene (NCBI)YIPF4  84272  Yip1 domain family member 4
AliasesFinGER4; Nbla11189
GeneCards (Weizmann)YIPF4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:32277889-32306589 [Contig_View]  YIPF4 [Vega]
TCGA cBioPortalYIPF4
AceView (NCBI)YIPF4
Genatlas (Paris)YIPF4
WikiGenes84272
SOURCE (Princeton)YIPF4
Genetics Home Reference (NIH)YIPF4
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF4  -     chr2:32277889-32306589 +  2p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF4  -     2p22.3   [Description]    (hg19-Feb_2009)
EnsemblYIPF4 - 2p22.3 [CytoView hg19]  YIPF4 - 2p22.3 [CytoView hg38]
Mapping of homologs : NCBIYIPF4 [Mapview hg19]  YIPF4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB072898 AK098486 AM393520 BC004875 BP207600
RefSeq transcript (Entrez)NM_032312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIPF4
Cluster EST : UnigeneHs.468099 [ NCBI ]
CGAP (NCI)Hs.468099
Gene ExpressionYIPF4 [ NCBI-GEO ]   YIPF4 [ EBI - ARRAY_EXPRESS ]   YIPF4 [ SEEK ]   YIPF4 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84272
GTEX Portal (Tissue expression)YIPF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSR8
Splice isoforms : SwissVarQ9BSR8
PhosPhoSitePlusQ9BSR8
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF4
DMDM Disease mutations84272
Blocks (Seattle)YIPF4
SuperfamilyQ9BSR8
Peptide AtlasQ9BSR8
HPRD14410
IPIIPI00031127   IPI00894297   IPI00892675   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSR8
IntAct (EBI)Q9BSR8
BioGRIDYIPF4
STRING (EMBL)YIPF4
ZODIACYIPF4
Ontologies - Pathways
QuickGOQ9BSR8
Ontology : AmiGOprotein binding  endoplasmic reticulum  Golgi apparatus  plasma membrane  integral component of membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  Golgi apparatus  plasma membrane  integral component of membrane  intracellular membrane-bounded organelle  
NDEx NetworkYIPF4
Atlas of Cancer Signalling NetworkYIPF4
Wikipedia pathwaysYIPF4
Orthology - Evolution
OrthoDB84272
Phylogenetic Trees/Animal Genes : TreeFamYIPF4
HOVERGENQ9BSR8
HOGENOMQ9BSR8
Homologs : HomoloGeneYIPF4
Homology/Alignments : Family Browser (UCSC)YIPF4
Gene fusions - Rearrangements
Fusion: Tumor Portal YIPF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF4
dbVarYIPF4
ClinVarYIPF4
1000_GenomesYIPF4 
Exome Variant ServerYIPF4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84272
Genomic Variants (DGV)YIPF4 [DGVbeta]
DECIPHERYIPF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF4 
Mutations
ICGC Data PortalYIPF4 
TCGA Data PortalYIPF4 
Broad Tumor PortalYIPF4
OASIS PortalYIPF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF4
DgiDB (Drug Gene Interaction Database)YIPF4
DoCM (Curated mutations)YIPF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF4 (select a term)
intoGenYIPF4
Cancer3DYIPF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYIPF4
Genetic Testing Registry YIPF4
NextProtQ9BSR8 [Medical]
TSGene84272
GENETestsYIPF4
Target ValidationYIPF4
Huge Navigator YIPF4 [HugePedia]
snp3D : Map Gene to Disease84272
BioCentury BCIQYIPF4
ClinGenYIPF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84272
Chemical/Pharm GKB GenePA142670547
Clinical trialYIPF4
Miscellaneous
canSAR (ICR)YIPF4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF4
EVEXYIPF4
GoPubMedYIPF4
iHOPYIPF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:04 CET 2017

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