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YIPF4 (Yip1 domain family member 4)

Identity

Alias (NCBI)FinGER4
Nbla11189
HGNC (Hugo) YIPF4
HGNC Alias symbMGC11061
FinGER4
HGNC Previous nameYip1 domain family, member 4
LocusID (NCBI) 84272
Atlas_Id 75813
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 32277904 and ends at 32316594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BIRC6 (2p22.3) / YIPF4 (2p22.3)FN1 (2q35) / YIPF4 (2p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)YIPF4   28145
Cards
Entrez_Gene (NCBI)YIPF4    Yip1 domain family member 4
AliasesFinGER4; Nbla11189
GeneCards (Weizmann)YIPF4
Ensembl hg19 (Hinxton)ENSG00000119820 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119820 [Gene_View]  ENSG00000119820 [Sequence]  chr2:32277904-32316594 [Contig_View]  YIPF4 [Vega]
ICGC DataPortalENSG00000119820
TCGA cBioPortalYIPF4
AceView (NCBI)YIPF4
Genatlas (Paris)YIPF4
SOURCE (Princeton)YIPF4
Genetics Home Reference (NIH)YIPF4
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF4  -     chr2:32277904-32316594 +  2p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF4  -     2p22.3   [Description]    (hg19-Feb_2009)
GoldenPathYIPF4 - 2p22.3 [CytoView hg19]  YIPF4 - 2p22.3 [CytoView hg38]
ImmunoBaseENSG00000119820
Genome Data Viewer NCBIYIPF4 [Mapview hg19]  
OMIM617534   
Gene and transcription
Genbank (Entrez)AB072898 AK098486 BC004875 BP207600 BU608699
RefSeq transcript (Entrez)NM_032312
Consensus coding sequences : CCDS (NCBI)YIPF4
Gene ExpressionYIPF4 [ NCBI-GEO ]   YIPF4 [ EBI - ARRAY_EXPRESS ]   YIPF4 [ SEEK ]   YIPF4 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF4 [ Firebrowse - Broad ]
GenevisibleExpression of YIPF4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84272
GTEX Portal (Tissue expression)YIPF4
Human Protein AtlasENSG00000119820-YIPF4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSR8
PhosPhoSitePlusQ9BSR8
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF4
SuperfamilyQ9BSR8
AlphaFold pdb e-kbQ9BSR8   
Human Protein Atlas [tissue]ENSG00000119820-YIPF4 [tissue]
HPRD14410
Protein Interaction databases
DIP (DOE-UCLA)Q9BSR8
IntAct (EBI)Q9BSR8
BioGRIDYIPF4
STRING (EMBL)YIPF4
ZODIACYIPF4
Ontologies - Pathways
QuickGOQ9BSR8
Ontology : AmiGOprotein binding  endoplasmic reticulum  Golgi apparatus  plasma membrane  integral component of membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  Golgi apparatus  plasma membrane  integral component of membrane  intracellular membrane-bounded organelle  
NDEx NetworkYIPF4
Atlas of Cancer Signalling NetworkYIPF4
Wikipedia pathwaysYIPF4
Orthology - Evolution
OrthoDB84272
GeneTree (enSembl)ENSG00000119820
Phylogenetic Trees/Animal Genes : TreeFamYIPF4
Homologs : HomoloGeneYIPF4
Homology/Alignments : Family Browser (UCSC)YIPF4
Gene fusions - Rearrangements
Fusion : QuiverYIPF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF4
dbVarYIPF4
ClinVarYIPF4
MonarchYIPF4
1000_GenomesYIPF4 
Exome Variant ServerYIPF4
GNOMAD BrowserENSG00000119820
Varsome BrowserYIPF4
ACMGYIPF4 variants
VarityQ9BSR8
Genomic Variants (DGV)YIPF4 [DGVbeta]
DECIPHERYIPF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF4 
Mutations
ICGC Data PortalYIPF4 
TCGA Data PortalYIPF4 
Broad Tumor PortalYIPF4
OASIS PortalYIPF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DYIPF4
Mutations and Diseases : HGMDYIPF4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaYIPF4
DgiDB (Drug Gene Interaction Database)YIPF4
DoCM (Curated mutations)YIPF4
CIViC (Clinical Interpretations of Variants in Cancer)YIPF4
Cancer3DYIPF4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617534   
Orphanet
DisGeNETYIPF4
MedgenYIPF4
Genetic Testing Registry YIPF4
NextProtQ9BSR8 [Medical]
GENETestsYIPF4
Target ValidationYIPF4
Huge Navigator YIPF4 [HugePedia]
ClinGenYIPF4
Clinical trials, drugs, therapy
MyCancerGenomeYIPF4
Protein Interactions : CTDYIPF4
Pharm GKB GenePA142670547
PharosQ9BSR8
Clinical trialYIPF4
Miscellaneous
canSAR (ICR)YIPF4
HarmonizomeYIPF4
DataMed IndexYIPF4
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXYIPF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:44 CEST 2021

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