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YIPF5 (Yip1 domain family member 5)

Identity

Alias_namesYip1 domain family
Alias_symbol (synonym)SMAP-5
FinGER5
Other aliasSB140
SMAP5
YIP1A
HGNC (Hugo) YIPF5
LocusID (NCBI) 81555
Atlas_Id 46103
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 144158159 and ends at 144170714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPIEL (1p34.3) / YIPF5 (5q31.3)RHOJ (14q23.2) / YIPF5 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF5   24877
Cards
Entrez_Gene (NCBI)YIPF5  81555  Yip1 domain family member 5
AliasesFinGER5; SB140; SMAP-5; SMAP5; 
YIP1A
GeneCards (Weizmann)YIPF5
Ensembl hg19 (Hinxton)ENSG00000145817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145817 [Gene_View]  chr5:144158159-144170714 [Contig_View]  YIPF5 [Vega]
ICGC DataPortalENSG00000145817
TCGA cBioPortalYIPF5
AceView (NCBI)YIPF5
Genatlas (Paris)YIPF5
WikiGenes81555
SOURCE (Princeton)YIPF5
Genetics Home Reference (NIH)YIPF5
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF5  -     chr5:144158159-144170714 -  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF5  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblYIPF5 - 5q31.3 [CytoView hg19]  YIPF5 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIYIPF5 [Mapview hg19]  YIPF5 [Mapview hg38]
OMIM611483   
Gene and transcription
Genbank (Entrez)AA811265 AB014733 AF140225 AF318329 AK054576
RefSeq transcript (Entrez)NM_001024947 NM_001271732 NM_030799
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIPF5
Cluster EST : UnigeneHs.372050 [ NCBI ]
CGAP (NCI)Hs.372050
Alternative Splicing GalleryENSG00000145817
Gene ExpressionYIPF5 [ NCBI-GEO ]   YIPF5 [ EBI - ARRAY_EXPRESS ]   YIPF5 [ SEEK ]   YIPF5 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81555
GTEX Portal (Tissue expression)YIPF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969M3
Splice isoforms : SwissVarQ969M3
PhosPhoSitePlusQ969M3
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF5
DMDM Disease mutations81555
Blocks (Seattle)YIPF5
SuperfamilyQ969M3
Human Protein AtlasENSG00000145817
Peptide AtlasQ969M3
HPRD18071
IPIIPI00334657   IPI00746973   IPI00748093   IPI01015652   IPI00979865   
Protein Interaction databases
DIP (DOE-UCLA)Q969M3
IntAct (EBI)Q969M3
FunCoupENSG00000145817
BioGRIDYIPF5
STRING (EMBL)YIPF5
ZODIACYIPF5
Ontologies - Pathways
QuickGOQ969M3
Ontology : AmiGOprotein binding  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  protein transport  integral component of membrane  vesicle-mediated transport  ER to Golgi transport vesicle  Golgi cisterna membrane  intracellular membrane-bounded organelle  regulation of ER to Golgi vesicle-mediated transport  endoplasmic reticulum exit site  
Ontology : EGO-EBIprotein binding  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  protein transport  integral component of membrane  vesicle-mediated transport  ER to Golgi transport vesicle  Golgi cisterna membrane  intracellular membrane-bounded organelle  regulation of ER to Golgi vesicle-mediated transport  endoplasmic reticulum exit site  
NDEx NetworkYIPF5
Atlas of Cancer Signalling NetworkYIPF5
Wikipedia pathwaysYIPF5
Orthology - Evolution
OrthoDB81555
GeneTree (enSembl)ENSG00000145817
Phylogenetic Trees/Animal Genes : TreeFamYIPF5
HOVERGENQ969M3
HOGENOMQ969M3
Homologs : HomoloGeneYIPF5
Homology/Alignments : Family Browser (UCSC)YIPF5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF5
dbVarYIPF5
ClinVarYIPF5
1000_GenomesYIPF5 
Exome Variant ServerYIPF5
ExAC (Exome Aggregation Consortium)YIPF5 (select the gene name)
Genetic variants : HAPMAP81555
Genomic Variants (DGV)YIPF5 [DGVbeta]
DECIPHERYIPF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF5 
Mutations
ICGC Data PortalYIPF5 
TCGA Data PortalYIPF5 
Broad Tumor PortalYIPF5
OASIS PortalYIPF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF5
DgiDB (Drug Gene Interaction Database)YIPF5
DoCM (Curated mutations)YIPF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF5 (select a term)
intoGenYIPF5
Cancer3DYIPF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611483   
Orphanet
MedgenYIPF5
Genetic Testing Registry YIPF5
NextProtQ969M3 [Medical]
TSGene81555
GENETestsYIPF5
Huge Navigator YIPF5 [HugePedia]
snp3D : Map Gene to Disease81555
BioCentury BCIQYIPF5
ClinGenYIPF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81555
Chemical/Pharm GKB GenePA142670548
Clinical trialYIPF5
Miscellaneous
canSAR (ICR)YIPF5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF5
EVEXYIPF5
GoPubMedYIPF5
iHOPYIPF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:26 CEST 2017

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