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YIPF6 (Yip1 domain family, member 6)

Identity

Alias_namesYip1 domain family, member 6
Alias_symbol (synonym)MGC21416
FinGER6
Other alias
HGNC (Hugo) YIPF6
LocusID (NCBI) 286451
Atlas_Id 75814
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 67718624 and ends at 67757127 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MID1 (Xp22.2) / YIPF6 (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF6   28304
Cards
Entrez_Gene (NCBI)YIPF6  286451  Yip1 domain family, member 6
AliasesFinGER6
GeneCards (Weizmann)YIPF6
Ensembl hg19 (Hinxton)ENSG00000181704 [Gene_View]  chrX:67718624-67757127 [Contig_View]  YIPF6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181704 [Gene_View]  chrX:67718624-67757127 [Contig_View]  YIPF6 [Vega]
ICGC DataPortalENSG00000181704
TCGA cBioPortalYIPF6
AceView (NCBI)YIPF6
Genatlas (Paris)YIPF6
WikiGenes286451
SOURCE (Princeton)YIPF6
Genetics Home Reference (NIH)YIPF6
Genomic and cartography
GoldenPath hg19 (UCSC)YIPF6  -     chrX:67718624-67757127 +  Xq12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YIPF6  -     Xq12   [Description]    (hg38-Dec_2013)
EnsemblYIPF6 - Xq12 [CytoView hg19]  YIPF6 - Xq12 [CytoView hg38]
Mapping of homologs : NCBIYIPF6 [Mapview hg19]  YIPF6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024673 AK026979 AK095555 AK292835 AK303992
RefSeq transcript (Entrez)NM_001195214 NM_173834
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)YIPF6
Cluster EST : UnigeneHs.82719 [ NCBI ]
CGAP (NCI)Hs.82719
Alternative Splicing GalleryENSG00000181704
Gene ExpressionYIPF6 [ NCBI-GEO ]   YIPF6 [ EBI - ARRAY_EXPRESS ]   YIPF6 [ SEEK ]   YIPF6 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286451
GTEX Portal (Tissue expression)YIPF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EC8
Splice isoforms : SwissVarQ96EC8
PhosPhoSitePlusQ96EC8
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF6
DMDM Disease mutations286451
Blocks (Seattle)YIPF6
SuperfamilyQ96EC8
Human Protein AtlasENSG00000181704
Peptide AtlasQ96EC8
HPRD06639
IPIIPI00061403   IPI00553187   
Protein Interaction databases
DIP (DOE-UCLA)Q96EC8
IntAct (EBI)Q96EC8
FunCoupENSG00000181704
BioGRIDYIPF6
STRING (EMBL)YIPF6
ZODIACYIPF6
Ontologies - Pathways
QuickGOQ96EC8
Ontology : AmiGOprotein binding  endoplasmic reticulum  cis-Golgi network  trans-Golgi network  integral component of membrane  ER to Golgi transport vesicle  identical protein binding  intestinal epithelial cell development  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  cis-Golgi network  trans-Golgi network  integral component of membrane  ER to Golgi transport vesicle  identical protein binding  intestinal epithelial cell development  
NDEx NetworkYIPF6
Atlas of Cancer Signalling NetworkYIPF6
Wikipedia pathwaysYIPF6
Orthology - Evolution
OrthoDB286451
GeneTree (enSembl)ENSG00000181704
Phylogenetic Trees/Animal Genes : TreeFamYIPF6
HOVERGENQ96EC8
HOGENOMQ96EC8
Homologs : HomoloGeneYIPF6
Homology/Alignments : Family Browser (UCSC)YIPF6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF6
dbVarYIPF6
ClinVarYIPF6
1000_GenomesYIPF6 
Exome Variant ServerYIPF6
ExAC (Exome Aggregation Consortium)YIPF6 (select the gene name)
Genetic variants : HAPMAP286451
Genomic Variants (DGV)YIPF6 [DGVbeta]
DECIPHER (Syndromes)X:67718624-67757127  ENSG00000181704
CONAN: Copy Number AnalysisYIPF6 
Mutations
ICGC Data PortalYIPF6 
TCGA Data PortalYIPF6 
Broad Tumor PortalYIPF6
OASIS PortalYIPF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF6
DgiDB (Drug Gene Interaction Database)YIPF6
DoCM (Curated mutations)YIPF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF6 (select a term)
intoGenYIPF6
Cancer3DYIPF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYIPF6
Genetic Testing Registry YIPF6
NextProtQ96EC8 [Medical]
TSGene286451
GENETestsYIPF6
Huge Navigator YIPF6 [HugePedia]
snp3D : Map Gene to Disease286451
BioCentury BCIQYIPF6
ClinGenYIPF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286451
Chemical/Pharm GKB GenePA142670549
Clinical trialYIPF6
Miscellaneous
canSAR (ICR)YIPF6 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF6
EVEXYIPF6
GoPubMedYIPF6
iHOPYIPF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:57 CET 2017

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