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YIPF6 (Yip1 domain family member 6)

Identity

Other aliasFinGER6
HGNC (Hugo) YIPF6
LocusID (NCBI) 286451
Atlas_Id 57196
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 68521473 and ends at 68532601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MID1 (Xp22.2) / YIPF6 (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF6   28304
Cards
Entrez_Gene (NCBI)YIPF6  286451  Yip1 domain family member 6
AliasesFinGER6
GeneCards (Weizmann)YIPF6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:68521473-68532601 [Contig_View]  YIPF6 [Vega]
TCGA cBioPortalYIPF6
AceView (NCBI)YIPF6
Genatlas (Paris)YIPF6
WikiGenes286451
SOURCE (Princeton)YIPF6
Genetics Home Reference (NIH)YIPF6
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF6  -     chrX:68521473-68532601 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF6  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblYIPF6 - Xq13.1 [CytoView hg19]  YIPF6 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIYIPF6 [Mapview hg19]  YIPF6 [Mapview hg38]
OMIM300996   
Gene and transcription
Genbank (Entrez)AK024673 AK026979 AK095555 AK292835 AK303992
RefSeq transcript (Entrez)NM_001195214 NM_173834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIPF6
Cluster EST : UnigeneHs.82719 [ NCBI ]
CGAP (NCI)Hs.82719
Gene ExpressionYIPF6 [ NCBI-GEO ]   YIPF6 [ EBI - ARRAY_EXPRESS ]   YIPF6 [ SEEK ]   YIPF6 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286451
GTEX Portal (Tissue expression)YIPF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EC8
Splice isoforms : SwissVarQ96EC8
PhosPhoSitePlusQ96EC8
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF6
DMDM Disease mutations286451
Blocks (Seattle)YIPF6
SuperfamilyQ96EC8
Peptide AtlasQ96EC8
IPIIPI00061403   IPI00553187   
Protein Interaction databases
DIP (DOE-UCLA)Q96EC8
IntAct (EBI)Q96EC8
BioGRIDYIPF6
STRING (EMBL)YIPF6
ZODIACYIPF6
Ontologies - Pathways
QuickGOQ96EC8
Ontology : AmiGOGolgi trans cisterna  protein binding  endoplasmic reticulum  Golgi medial cisterna  cis-Golgi network  trans-Golgi network  integral component of membrane  COPII-coated ER to Golgi transport vesicle  identical protein binding  intestinal epithelial cell development  
Ontology : EGO-EBIGolgi trans cisterna  protein binding  endoplasmic reticulum  Golgi medial cisterna  cis-Golgi network  trans-Golgi network  integral component of membrane  COPII-coated ER to Golgi transport vesicle  identical protein binding  intestinal epithelial cell development  
NDEx NetworkYIPF6
Atlas of Cancer Signalling NetworkYIPF6
Wikipedia pathwaysYIPF6
Orthology - Evolution
OrthoDB286451
Phylogenetic Trees/Animal Genes : TreeFamYIPF6
HOVERGENQ96EC8
HOGENOMQ96EC8
Homologs : HomoloGeneYIPF6
Homology/Alignments : Family Browser (UCSC)YIPF6
Gene fusions - Rearrangements
Tumor Fusion PortalYIPF6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF6
dbVarYIPF6
ClinVarYIPF6
1000_GenomesYIPF6 
Exome Variant ServerYIPF6
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP286451
Genomic Variants (DGV)YIPF6 [DGVbeta]
DECIPHERYIPF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF6 
Mutations
ICGC Data PortalYIPF6 
TCGA Data PortalYIPF6 
Broad Tumor PortalYIPF6
OASIS PortalYIPF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF6
BioMutasearch YIPF6
DgiDB (Drug Gene Interaction Database)YIPF6
DoCM (Curated mutations)YIPF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF6 (select a term)
intoGenYIPF6
Cancer3DYIPF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300996   
Orphanet
DisGeNETYIPF6
MedgenYIPF6
Genetic Testing Registry YIPF6
NextProtQ96EC8 [Medical]
TSGene286451
GENETestsYIPF6
Target ValidationYIPF6
Huge Navigator YIPF6 [HugePedia]
snp3D : Map Gene to Disease286451
BioCentury BCIQYIPF6
ClinGenYIPF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286451
Chemical/Pharm GKB GenePA142670549
Clinical trialYIPF6
Miscellaneous
canSAR (ICR)YIPF6 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF6
EVEXYIPF6
GoPubMedYIPF6
iHOPYIPF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:41:59 CET 2017

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