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YIPF6 (Yip1 domain family member 6)

Identity

Alias (NCBI)FinGER6
HGNC (Hugo) YIPF6
HGNC Alias symbMGC21416
FinGER6
HGNC Previous nameYip1 domain family, member 6
LocusID (NCBI) 286451
Atlas_Id 57196
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 68499051 and ends at 68537279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MID1 (Xp22.2) / YIPF6 (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)YIPF6   28304
Cards
Entrez_Gene (NCBI)YIPF6    Yip1 domain family member 6
AliasesFinGER6
GeneCards (Weizmann)YIPF6
Ensembl hg19 (Hinxton)ENSG00000181704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181704 [Gene_View]  ENSG00000181704 [Sequence]  chrX:68499051-68537279 [Contig_View]  YIPF6 [Vega]
ICGC DataPortalENSG00000181704
TCGA cBioPortalYIPF6
AceView (NCBI)YIPF6
Genatlas (Paris)YIPF6
SOURCE (Princeton)YIPF6
Genetics Home Reference (NIH)YIPF6
Genomic and cartography
GoldenPath hg38 (UCSC)YIPF6  -     chrX:68499051-68537279 +  Xq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIPF6  -     Xq12   [Description]    (hg19-Feb_2009)
GoldenPathYIPF6 - Xq12 [CytoView hg19]  YIPF6 - Xq12 [CytoView hg38]
ImmunoBaseENSG00000181704
Genome Data Viewer NCBIYIPF6 [Mapview hg19]  
OMIM300996   
Gene and transcription
Genbank (Entrez)AK024673 AK026979 AK095555 AK292835 AK303992
RefSeq transcript (Entrez)NM_001195214 NM_173834
Consensus coding sequences : CCDS (NCBI)YIPF6
Gene ExpressionYIPF6 [ NCBI-GEO ]   YIPF6 [ EBI - ARRAY_EXPRESS ]   YIPF6 [ SEEK ]   YIPF6 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF6 [ Firebrowse - Broad ]
GenevisibleExpression of YIPF6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286451
GTEX Portal (Tissue expression)YIPF6
Human Protein AtlasENSG00000181704-YIPF6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EC8
PhosPhoSitePlusQ96EC8
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF6
SuperfamilyQ96EC8
AlphaFold pdb e-kbQ96EC8   
Human Protein Atlas [tissue]ENSG00000181704-YIPF6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96EC8
IntAct (EBI)Q96EC8
BioGRIDYIPF6
STRING (EMBL)YIPF6
ZODIACYIPF6
Ontologies - Pathways
QuickGOQ96EC8
Ontology : AmiGOGolgi trans cisterna  Golgi membrane  protein binding  endoplasmic reticulum  Golgi medial cisterna  cis-Golgi network  trans-Golgi network  integral component of membrane  COPII-coated ER to Golgi transport vesicle  identical protein binding  intestinal epithelial cell development  
Ontology : EGO-EBIGolgi trans cisterna  Golgi membrane  protein binding  endoplasmic reticulum  Golgi medial cisterna  cis-Golgi network  trans-Golgi network  integral component of membrane  COPII-coated ER to Golgi transport vesicle  identical protein binding  intestinal epithelial cell development  
NDEx NetworkYIPF6
Atlas of Cancer Signalling NetworkYIPF6
Wikipedia pathwaysYIPF6
Orthology - Evolution
OrthoDB286451
GeneTree (enSembl)ENSG00000181704
Phylogenetic Trees/Animal Genes : TreeFamYIPF6
Homologs : HomoloGeneYIPF6
Homology/Alignments : Family Browser (UCSC)YIPF6
Gene fusions - Rearrangements
Fusion : QuiverYIPF6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF6
dbVarYIPF6
ClinVarYIPF6
MonarchYIPF6
1000_GenomesYIPF6 
Exome Variant ServerYIPF6
GNOMAD BrowserENSG00000181704
Varsome BrowserYIPF6
ACMGYIPF6 variants
VarityQ96EC8
Genomic Variants (DGV)YIPF6 [DGVbeta]
DECIPHERYIPF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIPF6 
Mutations
ICGC Data PortalYIPF6 
TCGA Data PortalYIPF6 
Broad Tumor PortalYIPF6
OASIS PortalYIPF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DYIPF6
Mutations and Diseases : HGMDYIPF6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaYIPF6
DgiDB (Drug Gene Interaction Database)YIPF6
DoCM (Curated mutations)YIPF6
CIViC (Clinical Interpretations of Variants in Cancer)YIPF6
Cancer3DYIPF6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300996   
Orphanet
DisGeNETYIPF6
MedgenYIPF6
Genetic Testing Registry YIPF6
NextProtQ96EC8 [Medical]
GENETestsYIPF6
Target ValidationYIPF6
Huge Navigator YIPF6 [HugePedia]
ClinGenYIPF6
Clinical trials, drugs, therapy
MyCancerGenomeYIPF6
Protein Interactions : CTDYIPF6
Pharm GKB GenePA142670549
PharosQ96EC8
Clinical trialYIPF6
Miscellaneous
canSAR (ICR)YIPF6
HarmonizomeYIPF6
DataMed IndexYIPF6
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXYIPF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:39 CEST 2021

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