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YIPF7 (Yip1 domain family, member 7)

Identity

Alias_namesYip1 domain family, member 7
Alias_symbol (synonym)FLJ39576
FinGER9
Other alias
HGNC (Hugo) YIPF7
LocusID (NCBI) 285525
Atlas_Id 75815
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 44624354 and ends at 44653658 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YIPF7   26825
Cards
Entrez_Gene (NCBI)YIPF7  285525  Yip1 domain family, member 7
AliasesFinGER9
GeneCards (Weizmann)YIPF7
Ensembl hg19 (Hinxton)ENSG00000177752 [Gene_View]  chr4:44624354-44653658 [Contig_View]  YIPF7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177752 [Gene_View]  chr4:44624354-44653658 [Contig_View]  YIPF7 [Vega]
ICGC DataPortalENSG00000177752
TCGA cBioPortalYIPF7
AceView (NCBI)YIPF7
Genatlas (Paris)YIPF7
WikiGenes285525
SOURCE (Princeton)YIPF7
Genetics Home Reference (NIH)YIPF7
Genomic and cartography
GoldenPath hg19 (UCSC)YIPF7  -     chr4:44624354-44653658 -  4p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YIPF7  -     4p12   [Description]    (hg38-Dec_2013)
EnsemblYIPF7 - 4p12 [CytoView hg19]  YIPF7 - 4p12 [CytoView hg38]
Mapping of homologs : NCBIYIPF7 [Mapview hg19]  YIPF7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096895 BC103995 BC103996 DB299886
RefSeq transcript (Entrez)NM_182592
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)YIPF7
Cluster EST : UnigeneHs.596000 [ NCBI ]
CGAP (NCI)Hs.596000
Alternative Splicing GalleryENSG00000177752
Gene ExpressionYIPF7 [ NCBI-GEO ]   YIPF7 [ EBI - ARRAY_EXPRESS ]   YIPF7 [ SEEK ]   YIPF7 [ MEM ]
Gene Expression Viewer (FireBrowse)YIPF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285525
GTEX Portal (Tissue expression)YIPF7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8F6
Splice isoforms : SwissVarQ8N8F6
PhosPhoSitePlusQ8N8F6
Domains : Interpro (EBI)Yip1   
Domain families : Pfam (Sanger)Yip1 (PF04893)   
Domain families : Pfam (NCBI)pfam04893   
Conserved Domain (NCBI)YIPF7
DMDM Disease mutations285525
Blocks (Seattle)YIPF7
SuperfamilyQ8N8F6
Human Protein AtlasENSG00000177752
Peptide AtlasQ8N8F6
HPRD08259
IPIIPI00298158   IPI00893065   IPI00651723   IPI00783057   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8F6
IntAct (EBI)Q8N8F6
FunCoupENSG00000177752
BioGRIDYIPF7
STRING (EMBL)YIPF7
ZODIACYIPF7
Ontologies - Pathways
QuickGOQ8N8F6
Ontology : AmiGOendoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkYIPF7
Atlas of Cancer Signalling NetworkYIPF7
Wikipedia pathwaysYIPF7
Orthology - Evolution
OrthoDB285525
GeneTree (enSembl)ENSG00000177752
Phylogenetic Trees/Animal Genes : TreeFamYIPF7
HOVERGENQ8N8F6
HOGENOMQ8N8F6
Homologs : HomoloGeneYIPF7
Homology/Alignments : Family Browser (UCSC)YIPF7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIPF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIPF7
dbVarYIPF7
ClinVarYIPF7
1000_GenomesYIPF7 
Exome Variant ServerYIPF7
ExAC (Exome Aggregation Consortium)YIPF7 (select the gene name)
Genetic variants : HAPMAP285525
Genomic Variants (DGV)YIPF7 [DGVbeta]
DECIPHER (Syndromes)4:44624354-44653658  ENSG00000177752
CONAN: Copy Number AnalysisYIPF7 
Mutations
ICGC Data PortalYIPF7 
TCGA Data PortalYIPF7 
Broad Tumor PortalYIPF7
OASIS PortalYIPF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIPF7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYIPF7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIPF7
DgiDB (Drug Gene Interaction Database)YIPF7
DoCM (Curated mutations)YIPF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIPF7 (select a term)
intoGenYIPF7
Cancer3DYIPF7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYIPF7
Genetic Testing Registry YIPF7
NextProtQ8N8F6 [Medical]
TSGene285525
GENETestsYIPF7
Huge Navigator YIPF7 [HugePedia]
snp3D : Map Gene to Disease285525
BioCentury BCIQYIPF7
ClinGenYIPF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285525
Chemical/Pharm GKB GenePA142670550
Clinical trialYIPF7
Miscellaneous
canSAR (ICR)YIPF7 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIPF7
EVEXYIPF7
GoPubMedYIPF7
iHOPYIPF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:57 CET 2017

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