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YJEFN3 (YjeF N-terminal domain containing 3)

Identity

Alias_symbol (synonym)hYjeF_N3-19p13.11
FLJ44968
Other alias-
HGNC (Hugo) YJEFN3
LocusID (NCBI) 374887
Atlas_Id 75816
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19528861 and ends at 19537584 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YJEFN3   24785
Cards
Entrez_Gene (NCBI)YJEFN3  374887  YjeF N-terminal domain containing 3
Aliases
GeneCards (Weizmann)YJEFN3
Ensembl hg19 (Hinxton)ENSG00000250067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250067 [Gene_View]  chr19:19528861-19537584 [Contig_View]  YJEFN3 [Vega]
ICGC DataPortalENSG00000250067
TCGA cBioPortalYJEFN3
AceView (NCBI)YJEFN3
Genatlas (Paris)YJEFN3
WikiGenes374887
SOURCE (Princeton)YJEFN3
Genetics Home Reference (NIH)YJEFN3
Genomic and cartography
GoldenPath hg38 (UCSC)YJEFN3  -     chr19:19528861-19537584 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YJEFN3  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblYJEFN3 - 19p13.11 [CytoView hg19]  YJEFN3 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIYJEFN3 [Mapview hg19]  YJEFN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094976 AK126916 BC020948 BC093948 BC112285
RefSeq transcript (Entrez)NM_001190328 NM_198537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YJEFN3
Cluster EST : UnigeneHs.729508 [ NCBI ]
CGAP (NCI)Hs.729508
Alternative Splicing GalleryENSG00000250067
Gene ExpressionYJEFN3 [ NCBI-GEO ]   YJEFN3 [ EBI - ARRAY_EXPRESS ]   YJEFN3 [ SEEK ]   YJEFN3 [ MEM ]
Gene Expression Viewer (FireBrowse)YJEFN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374887
GTEX Portal (Tissue expression)YJEFN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6XGL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6XGL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6XGL0
Splice isoforms : SwissVarA6XGL0
PhosPhoSitePlusA6XGL0
Domaine pattern : Prosite (Expaxy)YJEF_N (PS51385)   
Domains : Interpro (EBI)YjeF_N_dom    YJEFN_prot_eukaryotes   
Domain families : Pfam (Sanger)YjeF_N (PF03853)   
Domain families : Pfam (NCBI)pfam03853   
Conserved Domain (NCBI)YJEFN3
DMDM Disease mutations374887
Blocks (Seattle)YJEFN3
SuperfamilyA6XGL0
Human Protein AtlasENSG00000250067
Peptide AtlasA6XGL0
HPRD13498
IPIIPI00909465   
Protein Interaction databases
DIP (DOE-UCLA)A6XGL0
IntAct (EBI)A6XGL0
FunCoupENSG00000250067
BioGRIDYJEFN3
STRING (EMBL)YJEFN3
ZODIACYJEFN3
Ontologies - Pathways
QuickGOA6XGL0
Ontology : AmiGOmitochondrion  NADHX epimerase activity  NADPHX epimerase activity  
Ontology : EGO-EBImitochondrion  NADHX epimerase activity  NADPHX epimerase activity  
NDEx NetworkYJEFN3
Atlas of Cancer Signalling NetworkYJEFN3
Wikipedia pathwaysYJEFN3
Orthology - Evolution
OrthoDB374887
GeneTree (enSembl)ENSG00000250067
Phylogenetic Trees/Animal Genes : TreeFamYJEFN3
HOVERGENA6XGL0
HOGENOMA6XGL0
Homologs : HomoloGeneYJEFN3
Homology/Alignments : Family Browser (UCSC)YJEFN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYJEFN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YJEFN3
dbVarYJEFN3
ClinVarYJEFN3
1000_GenomesYJEFN3 
Exome Variant ServerYJEFN3
ExAC (Exome Aggregation Consortium)YJEFN3 (select the gene name)
Genetic variants : HAPMAP374887
Genomic Variants (DGV)YJEFN3 [DGVbeta]
DECIPHERYJEFN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYJEFN3 
Mutations
ICGC Data PortalYJEFN3 
TCGA Data PortalYJEFN3 
Broad Tumor PortalYJEFN3
OASIS PortalYJEFN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYJEFN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYJEFN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YJEFN3
DgiDB (Drug Gene Interaction Database)YJEFN3
DoCM (Curated mutations)YJEFN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YJEFN3 (select a term)
intoGenYJEFN3
Cancer3DYJEFN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYJEFN3
Genetic Testing Registry YJEFN3
NextProtA6XGL0 [Medical]
TSGene374887
GENETestsYJEFN3
Huge Navigator YJEFN3 [HugePedia]
snp3D : Map Gene to Disease374887
BioCentury BCIQYJEFN3
ClinGenYJEFN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374887
Chemical/Pharm GKB GenePA164727608
Clinical trialYJEFN3
Miscellaneous
canSAR (ICR)YJEFN3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYJEFN3
EVEXYJEFN3
GoPubMedYJEFN3
iHOPYJEFN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:52 CEST 2017

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