Atlas of Genetics and Cytogenetics in Oncology and Haematology


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YKT6 (YKT6 v-SNARE homolog (S. cerevisiae))

Identity

Other alias-
HGNC (Hugo) YKT6
LocusID (NCBI) 10652
Atlas_Id 49756
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44240578 and ends at 44253893 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DDX56 (7p13) / YKT6 (7p13)MMP11 (22q11.23) / YKT6 (7p13)YKT6 (7p13) / YKT6 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YKT6   16959
Cards
Entrez_Gene (NCBI)YKT6  10652  YKT6 v-SNARE homolog (S. cerevisiae)
Aliases
GeneCards (Weizmann)YKT6
Ensembl hg19 (Hinxton)ENSG00000106636 [Gene_View]  chr7:44240578-44253893 [Contig_View]  YKT6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106636 [Gene_View]  chr7:44240578-44253893 [Contig_View]  YKT6 [Vega]
ICGC DataPortalENSG00000106636
TCGA cBioPortalYKT6
AceView (NCBI)YKT6
Genatlas (Paris)YKT6
WikiGenes10652
SOURCE (Princeton)YKT6
Genetics Home Reference (NIH)YKT6
Genomic and cartography
GoldenPath hg19 (UCSC)YKT6  -     chr7:44240578-44253893 +  7p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YKT6  -     7p13   [Description]    (hg38-Dec_2013)
EnsemblYKT6 - 7p13 [CytoView hg19]  YKT6 - 7p13 [CytoView hg38]
Mapping of homologs : NCBIYKT6 [Mapview hg19]  YKT6 [Mapview hg38]
OMIM606209   
Gene and transcription
Genbank (Entrez)AB451317 AB451447 AF091079 AK075018 AK097209
RefSeq transcript (Entrez)NM_006555
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)YKT6
Cluster EST : UnigeneHs.520794 [ NCBI ]
CGAP (NCI)Hs.520794
Alternative Splicing GalleryENSG00000106636
Gene ExpressionYKT6 [ NCBI-GEO ]   YKT6 [ EBI - ARRAY_EXPRESS ]   YKT6 [ SEEK ]   YKT6 [ MEM ]
Gene Expression Viewer (FireBrowse)YKT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10652
GTEX Portal (Tissue expression)YKT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15498   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15498  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15498
Splice isoforms : SwissVarO15498
Catalytic activity : Enzyme2.3.1.- [ Enzyme-Expasy ]   2.3.1.-2.3.1.- [ IntEnz-EBI ]   2.3.1.- [ BRENDA ]   2.3.1.- [ KEGG ]   
PhosPhoSitePlusO15498
Domaine pattern : Prosite (Expaxy)LONGIN (PS50859)    V_SNARE (PS50892)   
Domains : Interpro (EBI)Longin-like_dom    Longin_dom    Synaptobrevin   
Domain families : Pfam (Sanger)Longin (PF13774)    Synaptobrevin (PF00957)   
Domain families : Pfam (NCBI)pfam13774    pfam00957   
Conserved Domain (NCBI)YKT6
DMDM Disease mutations10652
Blocks (Seattle)YKT6
SuperfamilyO15498
Human Protein AtlasENSG00000106636
Peptide AtlasO15498
HPRD16205
IPIIPI00008569   IPI00909691   IPI00924927   
Protein Interaction databases
DIP (DOE-UCLA)O15498
IntAct (EBI)O15498
FunCoupENSG00000106636
BioGRIDYKT6
STRING (EMBL)YKT6
ZODIACYKT6
Ontologies - Pathways
QuickGOO15498
Ontology : AmiGOGolgi membrane  SNARE binding  SNAP receptor activity  cytoplasm  mitochondrion  endosome  endoplasmic reticulum  Golgi apparatus  cytosol  integral component of plasma membrane  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  vesicle targeting  vesicle docking involved in exocytosis  vesicle fusion  metabolic process  protein transport  protein-cysteine S-palmitoyltransferase activity  transport vesicle  cytoplasmic vesicle membrane  SNARE complex  SNARE complex  endoplasmic reticulum-Golgi intermediate compartment membrane  retrograde transport, endosome to Golgi  neuronal cell body  extracellular exosome  apical dendrite  basilar dendrite  
Ontology : EGO-EBIGolgi membrane  SNARE binding  SNAP receptor activity  cytoplasm  mitochondrion  endosome  endoplasmic reticulum  Golgi apparatus  cytosol  integral component of plasma membrane  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  vesicle targeting  vesicle docking involved in exocytosis  vesicle fusion  metabolic process  protein transport  protein-cysteine S-palmitoyltransferase activity  transport vesicle  cytoplasmic vesicle membrane  SNARE complex  SNARE complex  endoplasmic reticulum-Golgi intermediate compartment membrane  retrograde transport, endosome to Golgi  neuronal cell body  extracellular exosome  apical dendrite  basilar dendrite  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkYKT6
Atlas of Cancer Signalling NetworkYKT6
Wikipedia pathwaysYKT6
Orthology - Evolution
OrthoDB10652
GeneTree (enSembl)ENSG00000106636
Phylogenetic Trees/Animal Genes : TreeFamYKT6
HOVERGENO15498
HOGENOMO15498
Homologs : HomoloGeneYKT6
Homology/Alignments : Family Browser (UCSC)YKT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYKT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YKT6
dbVarYKT6
ClinVarYKT6
1000_GenomesYKT6 
Exome Variant ServerYKT6
ExAC (Exome Aggregation Consortium)YKT6 (select the gene name)
Genetic variants : HAPMAP10652
Genomic Variants (DGV)YKT6 [DGVbeta]
DECIPHER (Syndromes)7:44240578-44253893  ENSG00000106636
CONAN: Copy Number AnalysisYKT6 
Mutations
ICGC Data PortalYKT6 
TCGA Data PortalYKT6 
Broad Tumor PortalYKT6
OASIS PortalYKT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYKT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYKT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YKT6
DgiDB (Drug Gene Interaction Database)YKT6
DoCM (Curated mutations)YKT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YKT6 (select a term)
intoGenYKT6
Cancer3DYKT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606209   
Orphanet
MedgenYKT6
Genetic Testing Registry YKT6
NextProtO15498 [Medical]
TSGene10652
GENETestsYKT6
Huge Navigator YKT6 [HugePedia]
snp3D : Map Gene to Disease10652
BioCentury BCIQYKT6
ClinGenYKT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10652
Chemical/Pharm GKB GenePA145007308
Clinical trialYKT6
Miscellaneous
canSAR (ICR)YKT6 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYKT6
EVEXYKT6
GoPubMedYKT6
iHOPYKT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:25:17 CEST 2017

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