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YLPM1 (YLP motif containing 1)

Identity

Alias_namesC14orf170
chromosome 14 open reading frame 170
Alias_symbol (synonym)ZAP
PPP1R169
Other aliasZAP113
ZAP3
HGNC (Hugo) YLPM1
LocusID (NCBI) 56252
Atlas_Id 75817
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74763366 and ends at 74837310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPHB6 (7q34) / YLPM1 (14q24.3)NAA38 (17p13.1) / YLPM1 (14q24.3)NOVA1 (14q12) / YLPM1 (14q24.3)
TBC1D5 (3p24.3) / YLPM1 (14q24.3)TKT (3p21.1) / YLPM1 (14q24.3)TTLL5 (14q24.3) / YLPM1 (14q24.3)
YLPM1 (14q24.3) / EPHB6 (7q34)YLPM1 (14q24.3) / MAGEA8 (Xq28)YLPM1 (14q24.3) / RPL6 (12q24.13)
YLPM1 (14q24.3) / YLPM1 (14q24.3)ZNF519 (18p11.21) / YLPM1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YLPM1   17798
Cards
Entrez_Gene (NCBI)YLPM1  56252  YLP motif containing 1
AliasesC14orf170; PPP1R169; ZAP113; ZAP3
GeneCards (Weizmann)YLPM1
Ensembl hg19 (Hinxton)ENSG00000119596 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119596 [Gene_View]  chr14:74763366-74837310 [Contig_View]  YLPM1 [Vega]
ICGC DataPortalENSG00000119596
TCGA cBioPortalYLPM1
AceView (NCBI)YLPM1
Genatlas (Paris)YLPM1
WikiGenes56252
SOURCE (Princeton)YLPM1
Genetics Home Reference (NIH)YLPM1
Genomic and cartography
GoldenPath hg38 (UCSC)YLPM1  -     chr14:74763366-74837310 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YLPM1  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblYLPM1 - 14q24.3 [CytoView hg19]  YLPM1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIYLPM1 [Mapview hg19]  YLPM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090435 AK095760 AK096592 AK297582 AL832365
RefSeq transcript (Entrez)NM_019589
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YLPM1
Cluster EST : UnigeneHs.531111 [ NCBI ]
CGAP (NCI)Hs.531111
Alternative Splicing GalleryENSG00000119596
Gene ExpressionYLPM1 [ NCBI-GEO ]   YLPM1 [ EBI - ARRAY_EXPRESS ]   YLPM1 [ SEEK ]   YLPM1 [ MEM ]
Gene Expression Viewer (FireBrowse)YLPM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56252
GTEX Portal (Tissue expression)YLPM1
Human Protein AtlasENSG00000119596-YLPM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49750   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49750  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49750
Splice isoforms : SwissVarP49750
PhosPhoSitePlusP49750
Domains : Interpro (EBI)P-loop_NTPase    YLP_motif_con_p1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)YLPM1
DMDM Disease mutations56252
Blocks (Seattle)YLPM1
SuperfamilyP49750
Human Protein Atlas [tissue]ENSG00000119596-YLPM1 [tissue]
Peptide AtlasP49750
IPIIPI00940874   IPI00514265   IPI00165434   IPI00448857   IPI01021932   IPI01022447   IPI01022286   IPI01025752   IPI01010257   
Protein Interaction databases
DIP (DOE-UCLA)P49750
IntAct (EBI)P49750
FunCoupENSG00000119596
BioGRIDYLPM1
STRING (EMBL)YLPM1
ZODIACYLPM1
Ontologies - Pathways
QuickGOP49750
Ontology : AmiGORNA binding  protein binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  nuclear speck  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  nuclear speck  
NDEx NetworkYLPM1
Atlas of Cancer Signalling NetworkYLPM1
Wikipedia pathwaysYLPM1
Orthology - Evolution
OrthoDB56252
GeneTree (enSembl)ENSG00000119596
Phylogenetic Trees/Animal Genes : TreeFamYLPM1
HOVERGENP49750
HOGENOMP49750
Homologs : HomoloGeneYLPM1
Homology/Alignments : Family Browser (UCSC)YLPM1
Gene fusions - Rearrangements
Tumor Fusion PortalYLPM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYLPM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YLPM1
dbVarYLPM1
ClinVarYLPM1
1000_GenomesYLPM1 
Exome Variant ServerYLPM1
ExAC (Exome Aggregation Consortium)ENSG00000119596
GNOMAD BrowserENSG00000119596
Genetic variants : HAPMAP56252
Genomic Variants (DGV)YLPM1 [DGVbeta]
DECIPHERYLPM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYLPM1 
Mutations
ICGC Data PortalYLPM1 
TCGA Data PortalYLPM1 
Broad Tumor PortalYLPM1
OASIS PortalYLPM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYLPM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYLPM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YLPM1
DgiDB (Drug Gene Interaction Database)YLPM1
DoCM (Curated mutations)YLPM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YLPM1 (select a term)
intoGenYLPM1
Cancer3DYLPM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETYLPM1
MedgenYLPM1
Genetic Testing Registry YLPM1
NextProtP49750 [Medical]
TSGene56252
GENETestsYLPM1
Target ValidationYLPM1
Huge Navigator YLPM1 [HugePedia]
snp3D : Map Gene to Disease56252
BioCentury BCIQYLPM1
ClinGenYLPM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56252
Chemical/Pharm GKB GenePA134962086
Clinical trialYLPM1
Miscellaneous
canSAR (ICR)YLPM1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYLPM1
EVEXYLPM1
GoPubMedYLPM1
iHOPYLPM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:51 CET 2017

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