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YPEL2 (yippee-like 2 (Drosophila))

Identity

Alias_namesyippee-like 2 (Drosophila)
Alias_symbol (synonym)FKSG4
Other alias
HGNC (Hugo) YPEL2
LocusID (NCBI) 388403
Atlas_Id 75820
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 57409053 and ends at 57479095 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MSI2 (17q22) / YPEL2 (17q22)PDE7A (8q13.1) / YPEL2 (17q22)SKAP1 (17q21.32) / YPEL2 (17q22)
YPEL2 (17q22) / HEATR6 (17q23.1)YPEL2 (17q22) / HSPA12B (20p13)YPEL2 (17q22) / SDF2 (17q11.2)
YPEL2 (17q22) / UBE2Z (17q21.32)YPEL2 (17q22) / YPEL2 (17q22)ZNF148 (3q21.2) / YPEL2 (17q22)
YPEL2 SDF2YPEL2 UBE2ZYPEL2 HSPA12B
YPEL2 HEATR6ZNF148 YPEL2MSI2 YPEL2
SKAP1 YPEL2PDE7A YPEL2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YPEL2   18326
Cards
Entrez_Gene (NCBI)YPEL2  388403  yippee-like 2 (Drosophila)
AliasesFKSG4
GeneCards (Weizmann)YPEL2
Ensembl hg19 (Hinxton)ENSG00000175155 [Gene_View]  chr17:57409053-57479095 [Contig_View]  YPEL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175155 [Gene_View]  chr17:57409053-57479095 [Contig_View]  YPEL2 [Vega]
ICGC DataPortalENSG00000175155
TCGA cBioPortalYPEL2
AceView (NCBI)YPEL2
Genatlas (Paris)YPEL2
WikiGenes388403
SOURCE (Princeton)YPEL2
Genetics Home Reference (NIH)YPEL2
Genomic and cartography
GoldenPath hg19 (UCSC)YPEL2  -     chr17:57409053-57479095 +  17q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YPEL2  -     17q22   [Description]    (hg38-Dec_2013)
EnsemblYPEL2 - 17q22 [CytoView hg19]  YPEL2 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIYPEL2 [Mapview hg19]  YPEL2 [Mapview hg38]
OMIM609723   
Gene and transcription
Genbank (Entrez)AA604677 AB098736 AF305195 AI540782 AK096866
RefSeq transcript (Entrez)NM_001005404
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)YPEL2
Cluster EST : UnigeneHs.463613 [ NCBI ]
CGAP (NCI)Hs.463613
Alternative Splicing GalleryENSG00000175155
Gene ExpressionYPEL2 [ NCBI-GEO ]   YPEL2 [ EBI - ARRAY_EXPRESS ]   YPEL2 [ SEEK ]   YPEL2 [ MEM ]
Gene Expression Viewer (FireBrowse)YPEL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388403
GTEX Portal (Tissue expression)YPEL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QA6
Splice isoforms : SwissVarQ96QA6
PhosPhoSitePlusQ96QA6
Domains : Interpro (EBI)Yippee/Mis18   
Domain families : Pfam (Sanger)Yippee-Mis18 (PF03226)   
Domain families : Pfam (NCBI)pfam03226   
Conserved Domain (NCBI)YPEL2
DMDM Disease mutations388403
Blocks (Seattle)YPEL2
SuperfamilyQ96QA6
Human Protein AtlasENSG00000175155
Peptide AtlasQ96QA6
HPRD15682
IPIIPI00397639   
Protein Interaction databases
DIP (DOE-UCLA)Q96QA6
IntAct (EBI)Q96QA6
FunCoupENSG00000175155
BioGRIDYPEL2
STRING (EMBL)YPEL2
ZODIACYPEL2
Ontologies - Pathways
QuickGOQ96QA6
Ontology : AmiGOnucleolus  
Ontology : EGO-EBInucleolus  
NDEx NetworkYPEL2
Atlas of Cancer Signalling NetworkYPEL2
Wikipedia pathwaysYPEL2
Orthology - Evolution
OrthoDB388403
GeneTree (enSembl)ENSG00000175155
Phylogenetic Trees/Animal Genes : TreeFamYPEL2
HOVERGENQ96QA6
HOGENOMQ96QA6
Homologs : HomoloGeneYPEL2
Homology/Alignments : Family Browser (UCSC)YPEL2
Gene fusions - Rearrangements
Fusion: TCGAYPEL2 SDF2
Fusion: TCGAYPEL2 UBE2Z
Fusion: TCGAYPEL2 HSPA12B
Fusion: TCGAYPEL2 HEATR6
Fusion: TCGAZNF148 YPEL2
Fusion: TCGAMSI2 YPEL2
Fusion: TCGASKAP1 YPEL2
Fusion: TCGAPDE7A YPEL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYPEL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YPEL2
dbVarYPEL2
ClinVarYPEL2
1000_GenomesYPEL2 
Exome Variant ServerYPEL2
ExAC (Exome Aggregation Consortium)YPEL2 (select the gene name)
Genetic variants : HAPMAP388403
Genomic Variants (DGV)YPEL2 [DGVbeta]
DECIPHER (Syndromes)17:57409053-57479095  ENSG00000175155
CONAN: Copy Number AnalysisYPEL2 
Mutations
ICGC Data PortalYPEL2 
TCGA Data PortalYPEL2 
Broad Tumor PortalYPEL2
OASIS PortalYPEL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYPEL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYPEL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YPEL2
DgiDB (Drug Gene Interaction Database)YPEL2
DoCM (Curated mutations)YPEL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YPEL2 (select a term)
intoGenYPEL2
Cancer3DYPEL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609723   
Orphanet
MedgenYPEL2
Genetic Testing Registry YPEL2
NextProtQ96QA6 [Medical]
TSGene388403
GENETestsYPEL2
Huge Navigator YPEL2 [HugePedia]
snp3D : Map Gene to Disease388403
BioCentury BCIQYPEL2
ClinGenYPEL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388403
Chemical/Pharm GKB GenePA134978522
Clinical trialYPEL2
Miscellaneous
canSAR (ICR)YPEL2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYPEL2
EVEXYPEL2
GoPubMedYPEL2
iHOPYPEL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:58 CET 2017

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