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YPEL4 (yippee-like 4 (Drosophila))

Identity

Alias_namesyippee-like 4 (Drosophila)
Alias_symbol (synonym)FLJ30213
Other alias-
HGNC (Hugo) YPEL4
LocusID (NCBI) 219539
Atlas_Id 75821
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57412560 and ends at 57417417 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
YPEL4 (11q12.1) / KMT2A (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YPEL4   18328
Cards
Entrez_Gene (NCBI)YPEL4  219539  yippee-like 4 (Drosophila)
Aliases
GeneCards (Weizmann)YPEL4
Ensembl hg19 (Hinxton)ENSG00000166793 [Gene_View]  chr11:57412560-57417417 [Contig_View]  YPEL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166793 [Gene_View]  chr11:57412560-57417417 [Contig_View]  YPEL4 [Vega]
ICGC DataPortalENSG00000166793
TCGA cBioPortalYPEL4
AceView (NCBI)YPEL4
Genatlas (Paris)YPEL4
WikiGenes219539
SOURCE (Princeton)YPEL4
Genetics Home Reference (NIH)YPEL4
Genomic and cartography
GoldenPath hg19 (UCSC)YPEL4  -     chr11:57412560-57417417 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)YPEL4  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblYPEL4 - 11q12.1 [CytoView hg19]  YPEL4 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIYPEL4 [Mapview hg19]  YPEL4 [Mapview hg38]
OMIM609725   
Gene and transcription
Genbank (Entrez)AB098738 AK054775 AK054967 AK124577 BC029228
RefSeq transcript (Entrez)NM_145008
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)YPEL4
Cluster EST : UnigeneHs.135978 [ NCBI ]
CGAP (NCI)Hs.135978
Alternative Splicing GalleryENSG00000166793
Gene ExpressionYPEL4 [ NCBI-GEO ]   YPEL4 [ EBI - ARRAY_EXPRESS ]   YPEL4 [ SEEK ]   YPEL4 [ MEM ]
Gene Expression Viewer (FireBrowse)YPEL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219539
GTEX Portal (Tissue expression)YPEL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NS1
Splice isoforms : SwissVarQ96NS1
PhosPhoSitePlusQ96NS1
Domains : Interpro (EBI)Yippee/Mis18   
Domain families : Pfam (Sanger)Yippee-Mis18 (PF03226)   
Domain families : Pfam (NCBI)pfam03226   
Conserved Domain (NCBI)YPEL4
DMDM Disease mutations219539
Blocks (Seattle)YPEL4
SuperfamilyQ96NS1
Human Protein AtlasENSG00000166793
Peptide AtlasQ96NS1
HPRD08081
IPIIPI00043857   IPI00984451   IPI00975869   
Protein Interaction databases
DIP (DOE-UCLA)Q96NS1
IntAct (EBI)Q96NS1
FunCoupENSG00000166793
BioGRIDYPEL4
STRING (EMBL)YPEL4
ZODIACYPEL4
Ontologies - Pathways
QuickGOQ96NS1
Ontology : AmiGOnucleolus  
Ontology : EGO-EBInucleolus  
NDEx NetworkYPEL4
Atlas of Cancer Signalling NetworkYPEL4
Wikipedia pathwaysYPEL4
Orthology - Evolution
OrthoDB219539
GeneTree (enSembl)ENSG00000166793
Phylogenetic Trees/Animal Genes : TreeFamYPEL4
HOVERGENQ96NS1
HOGENOMQ96NS1
Homologs : HomoloGeneYPEL4
Homology/Alignments : Family Browser (UCSC)YPEL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYPEL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YPEL4
dbVarYPEL4
ClinVarYPEL4
1000_GenomesYPEL4 
Exome Variant ServerYPEL4
ExAC (Exome Aggregation Consortium)YPEL4 (select the gene name)
Genetic variants : HAPMAP219539
Genomic Variants (DGV)YPEL4 [DGVbeta]
DECIPHER (Syndromes)11:57412560-57417417  ENSG00000166793
CONAN: Copy Number AnalysisYPEL4 
Mutations
ICGC Data PortalYPEL4 
TCGA Data PortalYPEL4 
Broad Tumor PortalYPEL4
OASIS PortalYPEL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYPEL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYPEL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YPEL4
DgiDB (Drug Gene Interaction Database)YPEL4
DoCM (Curated mutations)YPEL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YPEL4 (select a term)
intoGenYPEL4
Cancer3DYPEL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609725   
Orphanet
MedgenYPEL4
Genetic Testing Registry YPEL4
NextProtQ96NS1 [Medical]
TSGene219539
GENETestsYPEL4
Huge Navigator YPEL4 [HugePedia]
snp3D : Map Gene to Disease219539
BioCentury BCIQYPEL4
ClinGenYPEL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219539
Chemical/Pharm GKB GenePA134991609
Clinical trialYPEL4
Miscellaneous
canSAR (ICR)YPEL4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYPEL4
EVEXYPEL4
GoPubMedYPEL4
iHOPYPEL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:58 CET 2017

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