Atlas of Genetics and Cytogenetics in Oncology and Haematology


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YRDC (yrdC N6-threonylcarbamoyltransferase domain containing)

Identity

Alias_namesyrdC domain containing (E.coli)
yrdC domain containing (E. coli)
Alias_symbol (synonym)FLJ23476
IRIP
SUA5
Other aliasDRIP3
HGNC (Hugo) YRDC
LocusID (NCBI) 79693
Atlas_Id 75822
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 37802942 and ends at 37808193 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YRDC   28905
Cards
Entrez_Gene (NCBI)YRDC  79693  yrdC N6-threonylcarbamoyltransferase domain containing
AliasesDRIP3; IRIP; SUA5
GeneCards (Weizmann)YRDC
Ensembl hg19 (Hinxton)ENSG00000196449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196449 [Gene_View]  chr1:37802942-37808193 [Contig_View]  YRDC [Vega]
ICGC DataPortalENSG00000196449
TCGA cBioPortalYRDC
AceView (NCBI)YRDC
Genatlas (Paris)YRDC
WikiGenes79693
SOURCE (Princeton)YRDC
Genetics Home Reference (NIH)YRDC
Genomic and cartography
GoldenPath hg38 (UCSC)YRDC  -     chr1:37802942-37808193 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YRDC  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblYRDC - 1p34.3 [CytoView hg19]  YRDC - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIYRDC [Mapview hg19]  YRDC [Mapview hg38]
OMIM612276   
Gene and transcription
Genbank (Entrez)AF250397 AK027129 AK129676 AL524812 AY172561
RefSeq transcript (Entrez)NM_024640
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YRDC
Cluster EST : UnigeneHs.301564 [ NCBI ]
CGAP (NCI)Hs.301564
Alternative Splicing GalleryENSG00000196449
Gene ExpressionYRDC [ NCBI-GEO ]   YRDC [ EBI - ARRAY_EXPRESS ]   YRDC [ SEEK ]   YRDC [ MEM ]
Gene Expression Viewer (FireBrowse)YRDC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79693
GTEX Portal (Tissue expression)YRDC
Human Protein AtlasENSG00000196449-YRDC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U90
Splice isoforms : SwissVarQ86U90
PhosPhoSitePlusQ86U90
Domaine pattern : Prosite (Expaxy)YRDC (PS51163)   
Domains : Interpro (EBI)DHBP_synth_RibB-like_a/b_dom    YrdC-like_dom   
Domain families : Pfam (Sanger)Sua5_yciO_yrdC (PF01300)   
Domain families : Pfam (NCBI)pfam01300   
Conserved Domain (NCBI)YRDC
DMDM Disease mutations79693
Blocks (Seattle)YRDC
SuperfamilyQ86U90
Human Protein Atlas [tissue]ENSG00000196449-YRDC [tissue]
Peptide AtlasQ86U90
HPRD18313
IPIIPI00384180   
Protein Interaction databases
DIP (DOE-UCLA)Q86U90
IntAct (EBI)Q86U90
FunCoupENSG00000196449
BioGRIDYRDC
STRING (EMBL)YRDC
ZODIACYRDC
Ontologies - Pathways
QuickGOQ86U90
Ontology : AmiGOtRNA binding  tRNA threonylcarbamoyladenosine modification  double-stranded RNA binding  cytoplasm  mitochondrion  regulation of translational fidelity  membrane  nucleotidyltransferase activity  negative regulation of transport  
Ontology : EGO-EBItRNA binding  tRNA threonylcarbamoyladenosine modification  double-stranded RNA binding  cytoplasm  mitochondrion  regulation of translational fidelity  membrane  nucleotidyltransferase activity  negative regulation of transport  
NDEx NetworkYRDC
Atlas of Cancer Signalling NetworkYRDC
Wikipedia pathwaysYRDC
Orthology - Evolution
OrthoDB79693
GeneTree (enSembl)ENSG00000196449
Phylogenetic Trees/Animal Genes : TreeFamYRDC
HOVERGENQ86U90
HOGENOMQ86U90
Homologs : HomoloGeneYRDC
Homology/Alignments : Family Browser (UCSC)YRDC
Gene fusions - Rearrangements
Fusion: Tumor Portal YRDC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYRDC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YRDC
dbVarYRDC
ClinVarYRDC
1000_GenomesYRDC 
Exome Variant ServerYRDC
ExAC (Exome Aggregation Consortium)ENSG00000196449
GNOMAD BrowserENSG00000196449
Genetic variants : HAPMAP79693
Genomic Variants (DGV)YRDC [DGVbeta]
DECIPHERYRDC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYRDC 
Mutations
ICGC Data PortalYRDC 
TCGA Data PortalYRDC 
Broad Tumor PortalYRDC
OASIS PortalYRDC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYRDC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYRDC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YRDC
DgiDB (Drug Gene Interaction Database)YRDC
DoCM (Curated mutations)YRDC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YRDC (select a term)
intoGenYRDC
Cancer3DYRDC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612276   
Orphanet
MedgenYRDC
Genetic Testing Registry YRDC
NextProtQ86U90 [Medical]
TSGene79693
GENETestsYRDC
Target ValidationYRDC
Huge Navigator YRDC [HugePedia]
snp3D : Map Gene to Disease79693
BioCentury BCIQYRDC
ClinGenYRDC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79693
Chemical/Pharm GKB GenePA142670553
Clinical trialYRDC
Miscellaneous
canSAR (ICR)YRDC (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYRDC
EVEXYRDC
GoPubMedYRDC
iHOPYRDC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:05 CET 2017

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