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YRDC (yrdC N6-threonylcarbamoyltransferase domain containing)

Identity

Alias (NCBI)DRIP3
IRIP
SUA5
HGNC (Hugo) YRDC
HGNC Alias symbFLJ23476
IRIP
SUA5
HGNC Alias nameischemia/reperfusion inducible protein
HGNC Previous nameyrdC domain containing (E.coli)
 yrdC domain containing (E. coli)
LocusID (NCBI) 79693
Atlas_Id 75822
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 37802945 and ends at 37808208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)YRDC   28905
Cards
Entrez_Gene (NCBI)YRDC    yrdC N6-threonylcarbamoyltransferase domain containing
AliasesDRIP3; IRIP; SUA5
GeneCards (Weizmann)YRDC
Ensembl hg19 (Hinxton)ENSG00000196449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196449 [Gene_View]  ENSG00000196449 [Sequence]  chr1:37802945-37808208 [Contig_View]  YRDC [Vega]
ICGC DataPortalENSG00000196449
TCGA cBioPortalYRDC
AceView (NCBI)YRDC
Genatlas (Paris)YRDC
SOURCE (Princeton)YRDC
Genetics Home Reference (NIH)YRDC
Genomic and cartography
GoldenPath hg38 (UCSC)YRDC  -     chr1:37802945-37808208 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YRDC  -     1p34.3   [Description]    (hg19-Feb_2009)
GoldenPathYRDC - 1p34.3 [CytoView hg19]  YRDC - 1p34.3 [CytoView hg38]
ImmunoBaseENSG00000196449
Genome Data Viewer NCBIYRDC [Mapview hg19]  
OMIM612276   
Gene and transcription
Genbank (Entrez)AF250397 AK027129 AK129676 AL524812 AY172561
RefSeq transcript (Entrez)NM_024640
Consensus coding sequences : CCDS (NCBI)YRDC
Gene ExpressionYRDC [ NCBI-GEO ]   YRDC [ EBI - ARRAY_EXPRESS ]   YRDC [ SEEK ]   YRDC [ MEM ]
Gene Expression Viewer (FireBrowse)YRDC [ Firebrowse - Broad ]
GenevisibleExpression of YRDC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79693
GTEX Portal (Tissue expression)YRDC
Human Protein AtlasENSG00000196449-YRDC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U90
PhosPhoSitePlusQ86U90
Domaine pattern : Prosite (Expaxy)YRDC (PS51163)   
Domains : Interpro (EBI)DHBP_synth_RibB-like_a/b_dom    YrdC-like_dom   
Domain families : Pfam (Sanger)Sua5_yciO_yrdC (PF01300)   
Domain families : Pfam (NCBI)pfam01300   
Conserved Domain (NCBI)YRDC
SuperfamilyQ86U90
AlphaFold pdb e-kbQ86U90   
Human Protein Atlas [tissue]ENSG00000196449-YRDC [tissue]
HPRD18313
Protein Interaction databases
DIP (DOE-UCLA)Q86U90
IntAct (EBI)Q86U90
BioGRIDYRDC
STRING (EMBL)YRDC
ZODIACYRDC
Ontologies - Pathways
QuickGOQ86U90
Ontology : AmiGOtRNA binding  double-stranded RNA binding  protein binding  cytoplasm  mitochondrion  regulation of translational fidelity  membrane  nucleotidyltransferase activity  negative regulation of transport  
Ontology : EGO-EBItRNA binding  double-stranded RNA binding  protein binding  cytoplasm  mitochondrion  regulation of translational fidelity  membrane  nucleotidyltransferase activity  negative regulation of transport  
NDEx NetworkYRDC
Atlas of Cancer Signalling NetworkYRDC
Wikipedia pathwaysYRDC
Orthology - Evolution
OrthoDB79693
GeneTree (enSembl)ENSG00000196449
Phylogenetic Trees/Animal Genes : TreeFamYRDC
Homologs : HomoloGeneYRDC
Homology/Alignments : Family Browser (UCSC)YRDC
Gene fusions - Rearrangements
Fusion : QuiverYRDC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYRDC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YRDC
dbVarYRDC
ClinVarYRDC
MonarchYRDC
1000_GenomesYRDC 
Exome Variant ServerYRDC
GNOMAD BrowserENSG00000196449
Varsome BrowserYRDC
ACMGYRDC variants
VarityQ86U90
Genomic Variants (DGV)YRDC [DGVbeta]
DECIPHERYRDC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYRDC 
Mutations
ICGC Data PortalYRDC 
TCGA Data PortalYRDC 
Broad Tumor PortalYRDC
OASIS PortalYRDC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYRDC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DYRDC
Mutations and Diseases : HGMDYRDC
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaYRDC
DgiDB (Drug Gene Interaction Database)YRDC
DoCM (Curated mutations)YRDC
CIViC (Clinical Interpretations of Variants in Cancer)YRDC
Cancer3DYRDC
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612276   
Orphanet
DisGeNETYRDC
MedgenYRDC
Genetic Testing Registry YRDC
NextProtQ86U90 [Medical]
GENETestsYRDC
Target ValidationYRDC
Huge Navigator YRDC [HugePedia]
ClinGenYRDC
Clinical trials, drugs, therapy
MyCancerGenomeYRDC
Protein Interactions : CTDYRDC
Pharm GKB GenePA142670553
PharosQ86U90
Clinical trialYRDC
Miscellaneous
canSAR (ICR)YRDC
HarmonizomeYRDC
ARCHS4YRDC
DataMed IndexYRDC
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXYRDC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:58:47 CET 2022

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