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YTHDF1 (YTH N6-methyladenosine RNA binding protein 1)

Identity

Alias_namesC20orf21
YTH domain family 1
YTH domain family, member 1
YTH N(6)-methyladenosine RNA binding protein 1
Alias_symbol (synonym)FLJ20391
Other alias
HGNC (Hugo) YTHDF1
LocusID (NCBI) 54915
Atlas_Id 75823
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63195430 and ends at 63216186 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
YTHDF1 (20q13.33) / YTHDF1 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YTHDF1   15867
Cards
Entrez_Gene (NCBI)YTHDF1  54915  YTH N6-methyladenosine RNA binding protein 1
AliasesC20orf21
GeneCards (Weizmann)YTHDF1
Ensembl hg19 (Hinxton)ENSG00000149658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149658 [Gene_View]  chr20:63195430-63216186 [Contig_View]  YTHDF1 [Vega]
ICGC DataPortalENSG00000149658
TCGA cBioPortalYTHDF1
AceView (NCBI)YTHDF1
Genatlas (Paris)YTHDF1
WikiGenes54915
SOURCE (Princeton)YTHDF1
Genetics Home Reference (NIH)YTHDF1
Genomic and cartography
GoldenPath hg38 (UCSC)YTHDF1  -     chr20:63195430-63216186 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YTHDF1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblYTHDF1 - 20q13.33 [CytoView hg19]  YTHDF1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIYTHDF1 [Mapview hg19]  YTHDF1 [Mapview hg38]
OMIM616529   
Gene and transcription
Genbank (Entrez)AB055518 AK000398 AK024546 AK095795 AK300073
RefSeq transcript (Entrez)NM_017798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YTHDF1
Cluster EST : UnigeneHs.744852 [ NCBI ]
CGAP (NCI)Hs.744852
Alternative Splicing GalleryENSG00000149658
Gene ExpressionYTHDF1 [ NCBI-GEO ]   YTHDF1 [ EBI - ARRAY_EXPRESS ]   YTHDF1 [ SEEK ]   YTHDF1 [ MEM ]
Gene Expression Viewer (FireBrowse)YTHDF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54915
GTEX Portal (Tissue expression)YTHDF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYJ9
Splice isoforms : SwissVarQ9BYJ9
PhosPhoSitePlusQ9BYJ9
Domaine pattern : Prosite (Expaxy)YTH (PS50882)   
Domains : Interpro (EBI)YTH_domain   
Domain families : Pfam (Sanger)YTH (PF04146)   
Domain families : Pfam (NCBI)pfam04146   
Conserved Domain (NCBI)YTHDF1
DMDM Disease mutations54915
Blocks (Seattle)YTHDF1
PDB (SRS)4RCI    4RCJ   
PDB (PDBSum)4RCI    4RCJ   
PDB (IMB)4RCI    4RCJ   
PDB (RSDB)4RCI    4RCJ   
Structural Biology KnowledgeBase4RCI    4RCJ   
SCOP (Structural Classification of Proteins)4RCI    4RCJ   
CATH (Classification of proteins structures)4RCI    4RCJ   
SuperfamilyQ9BYJ9
Human Protein AtlasENSG00000149658
Peptide AtlasQ9BYJ9
HPRD11691
IPIIPI00843759   IPI00414899   IPI00953665   IPI01012814   IPI00552188   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYJ9
IntAct (EBI)Q9BYJ9
FunCoupENSG00000149658
BioGRIDYTHDF1
STRING (EMBL)YTHDF1
ZODIACYTHDF1
Ontologies - Pathways
QuickGOQ9BYJ9
Ontology : AmiGORNA binding  protein binding  cytoplasm  ribosome binding  positive regulation of translation  positive regulation of translational initiation  N6-methyladenosine-containing RNA binding  
Ontology : EGO-EBIRNA binding  protein binding  cytoplasm  ribosome binding  positive regulation of translation  positive regulation of translational initiation  N6-methyladenosine-containing RNA binding  
NDEx NetworkYTHDF1
Atlas of Cancer Signalling NetworkYTHDF1
Wikipedia pathwaysYTHDF1
Orthology - Evolution
OrthoDB54915
GeneTree (enSembl)ENSG00000149658
Phylogenetic Trees/Animal Genes : TreeFamYTHDF1
HOVERGENQ9BYJ9
HOGENOMQ9BYJ9
Homologs : HomoloGeneYTHDF1
Homology/Alignments : Family Browser (UCSC)YTHDF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYTHDF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YTHDF1
dbVarYTHDF1
ClinVarYTHDF1
1000_GenomesYTHDF1 
Exome Variant ServerYTHDF1
ExAC (Exome Aggregation Consortium)YTHDF1 (select the gene name)
Genetic variants : HAPMAP54915
Genomic Variants (DGV)YTHDF1 [DGVbeta]
DECIPHERYTHDF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYTHDF1 
Mutations
ICGC Data PortalYTHDF1 
TCGA Data PortalYTHDF1 
Broad Tumor PortalYTHDF1
OASIS PortalYTHDF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYTHDF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYTHDF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YTHDF1
DgiDB (Drug Gene Interaction Database)YTHDF1
DoCM (Curated mutations)YTHDF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YTHDF1 (select a term)
intoGenYTHDF1
Cancer3DYTHDF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616529   
Orphanet
MedgenYTHDF1
Genetic Testing Registry YTHDF1
NextProtQ9BYJ9 [Medical]
TSGene54915
GENETestsYTHDF1
Target ValidationYTHDF1
Huge Navigator YTHDF1 [HugePedia]
snp3D : Map Gene to Disease54915
BioCentury BCIQYTHDF1
ClinGenYTHDF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54915
Chemical/Pharm GKB GenePA25737
Clinical trialYTHDF1
Miscellaneous
canSAR (ICR)YTHDF1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYTHDF1
EVEXYTHDF1
GoPubMedYTHDF1
iHOPYTHDF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:19 CEST 2017

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