Atlas of Genetics and Cytogenetics in Oncology and Haematology

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YY1 (YY1 transcription factor)

Identity

Other namesDELTA
INO80S
NF-E1
UCRBP
YIN-YANG-1
HGNC (Hugo) YY1
LocusID (NCBI) 7528
Location 14q32.2
Location_base_pair Starts at 100705102 and ends at 100744804 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)YY1   12856
Entrez_Gene (NCBI)YY1  7528  YY1 transcription factor
Cards
GeneCards (Weizmann)YY1
Ensembl (Hinxton)ENSG00000100811 [Gene_View]  chr14:100705102-100744804 [Contig_View]  YY1 [Vega]
AceView (NCBI)YY1
Genatlas (Paris)YY1
SOURCE (Stanford)NM_003403
Genomic and cartography
GoldenPath (UCSC)YY1  -  14q32.2   chr14:100705102-100744804 +  14q32.2   [Description]    (hg19-Feb_2009)
EnsemblYY1 - 14q32.2 [CytoView]
Mapping of homologs : NCBIYY1 [Mapview]
OMIM600013   
Gene and transcription
Genbank (Entrez)AF147416 AK025731 AK026497 BC014138 BC020324
RefSeq transcript (SRS)NM_003403
RefSeq transcript (Entrez)NM_003403
RefSeq genomic (SRS)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838115 NW_004078079
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838115 NW_004078079
Consensus coding sequences : CCDS (NCBI)YY1
Cluster EST : UnigeneHs.603118 [ SRS ] Hs.603118 [ NCBI ]
CGAP (NCI)Hs.603118
Alternative Splicing : Fast-db (Paris)GSHG0009112
Alternative Splicing GalleryENSG00000100811
Gene ExpressionYY1 [ NCBI-GEO ]   YY1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP25490 (SRS) P25490 (Uniprot)
NextProtP25490
With graphics : InterProP25490
Splice isoforms : SwissVarP25490(Swissvar)
Domaine pattern : Prosite (SRS)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)TF_Yin_yang    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)TF_Yin_yang    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrP25490
Domain families : Pfam (SRS)zf-C2H2 (PF00096)   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM7528
Blocks (Seattle)P25490
PDB (SRS)1UBD    1ZNM   
PDB (PDBSum)1UBD    1ZNM   
PDB (IMB)1UBD    1ZNM   
PDB (RSDB)1UBD    1ZNM   
Human Protein AtlasENSG00000100811
HPRD02482
IPIIPI00014513   IPI01026056   IPI01025682   IPI01025781   
Protein Interaction databases
DIP (DOE-UCLA)P25490
IntAct (EBI)P25490
FunCoupENSG00000100811
REACTOMEYY1
Protein Interaction Database7528
BioGRIDYY1
InParanoidP25490
Interologous Interaction database P25490
IntegromeDBYY1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)YY1
SNP (GeneSNP Utah)YY1
SNP : HGBaseYY1
Genetic variants : HAPMAPYY1
Somatic Mutations in Cancer : COSMICYY1 
CONAN: Copy Number AnalysisYY1 
Mutations and Diseases : HGMDYY1
OMIM600013   
GENETests600013   
Disease Genetic AssociationYY1
Huge Navigator YY1 [HugePedia]  YY1 [HugeCancerGEM]
Genomic VariantsYY1  YY1 [DGVbeta]
snp3D : Map Gene to Disease7528
General knowledge
Homologs : HomoloGeneYY1
Homology/Alignments : Family Browser (UCSC)YY1
Phylogenetic Trees/Animal Genes : TreeFamYY1
Chemical/Protein Interactions : CTD7528
Chemical/Pharm GKB GenePA37445
Clinical trialYY1
Cancer Resource (Charite)ENSG00000100811
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  four-way junction DNA binding  double-strand break repair via homologous recombination  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription  DNA binding  sequence-specific DNA binding transcription factor activity  transcription coactivator activity  transcription corepressor activity  RNA binding  protein binding  nucleus  transcription factor complex  plasma membrane  regulation of transcription from RNA polymerase II promoter  RNA localization  response to DNA damage stimulus  spermatogenesis  zinc ion binding  anterior/posterior pattern specification  response to UV-C  nuclear matrix  cell differentiation  Ino80 complex  PcG protein complex  cellular response to UV  transcription regulatory region DNA binding  metal ion binding  camera-type eye morphogenesis  chromosome organization  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  four-way junction DNA binding  double-strand break repair via homologous recombination  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription  DNA binding  sequence-specific DNA binding transcription factor activity  transcription coactivator activity  transcription corepressor activity  RNA binding  protein binding  nucleus  transcription factor complex  plasma membrane  regulation of transcription from RNA polymerase II promoter  RNA localization  response to DNA damage stimulus  spermatogenesis  zinc ion binding  anterior/posterior pattern specification  response to UV-C  nuclear matrix  cell differentiation  Ino80 complex  PcG protein complex  cellular response to UV  transcription regulatory region DNA binding  metal ion binding  camera-type eye morphogenesis  chromosome organization  
Pathways : BIOCARTAThe PRC2 Complex Sets Long-term Gene Silencing Through Modification of Histone Tails [Genes]   
Other databases
Probes
Litterature
PubMed206 Pubmed reference(s) in Entrez
PubGeneYY1
iHOPYY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:47:04 CEST 2013
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