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YY1AP1 (YY1 associated protein 1)

Identity

Alias_symbol (synonym)YY1AP
HCCA2
YAP
Other aliasGRNG
HCCA1
HGNC (Hugo) YY1AP1
LocusID (NCBI) 55249
Atlas_Id 42854
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155659442 and ends at 155679829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRD2 (6p21.32) / YY1AP1 (1q22)HNRNPUL2 (11q12.3) / YY1AP1 (1q22)TRIM5 (11p15.4) / YY1AP1 (1q22)
YY1AP1 (1q22) / HOXA3 (7p15.2)YY1AP1 (1q22) / MLXIP (12q24.31)YY1AP1 (1q22) / MRPL51 (12p13.31)
YY1AP1 (1q22) / PRCC (1q23.1)YY1AP1 (1q22) / TOMM7 (7p15.3)YY1AP1 (1q22) / YY1AP1 (1q22)
ZFP36 (19q13.2) / YY1AP1 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YY1AP1   30935
Cards
Entrez_Gene (NCBI)YY1AP1  55249  YY1 associated protein 1
AliasesGRNG; HCCA1; HCCA2; YY1AP
GeneCards (Weizmann)YY1AP1
Ensembl hg19 (Hinxton)ENSG00000163374 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163374 [Gene_View]  chr1:155659442-155679829 [Contig_View]  YY1AP1 [Vega]
ICGC DataPortalENSG00000163374
TCGA cBioPortalYY1AP1
AceView (NCBI)YY1AP1
Genatlas (Paris)YY1AP1
WikiGenes55249
SOURCE (Princeton)YY1AP1
Genetics Home Reference (NIH)YY1AP1
Genomic and cartography
GoldenPath hg38 (UCSC)YY1AP1  -     chr1:155659442-155679829 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YY1AP1  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblYY1AP1 - 1q22 [CytoView hg19]  YY1AP1 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIYY1AP1 [Mapview hg19]  YY1AP1 [Mapview hg38]
OMIM602531   607860   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001198899 NM_001198900 NM_001198901 NM_001198902 NM_001198903 NM_001198904 NM_001198905 NM_001198906 NM_018253 NM_139118 NM_139119 NM_139120 NM_139121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YY1AP1
Cluster EST : UnigeneHs.584927 [ NCBI ]
CGAP (NCI)Hs.584927
Alternative Splicing GalleryENSG00000163374
Gene ExpressionYY1AP1 [ NCBI-GEO ]   YY1AP1 [ EBI - ARRAY_EXPRESS ]   YY1AP1 [ SEEK ]   YY1AP1 [ MEM ]
Gene Expression Viewer (FireBrowse)YY1AP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55249
GTEX Portal (Tissue expression)YY1AP1
Human Protein AtlasENSG00000163374-YY1AP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H869   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H869  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H869
Splice isoforms : SwissVarQ9H869
PhosPhoSitePlusQ9H869
Domains : Interpro (EBI)YY1AP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)YY1AP1
DMDM Disease mutations55249
Blocks (Seattle)YY1AP1
SuperfamilyQ9H869
Human Protein Atlas [tissue]ENSG00000163374-YY1AP1 [tissue]
Peptide AtlasQ9H869
HPRD08485
IPIIPI00640856   IPI00939489   IPI00375458   IPI00657728   IPI00419581   IPI00376951   IPI00657727   IPI00149321   IPI00794110   IPI00303506   IPI00795952   IPI00470826   IPI00892852   IPI00894218   IPI00894100   
Protein Interaction databases
DIP (DOE-UCLA)Q9H869
IntAct (EBI)Q9H869
FunCoupENSG00000163374
BioGRIDYY1AP1
STRING (EMBL)YY1AP1
ZODIACYY1AP1
Ontologies - Pathways
QuickGOQ9H869
Ontology : AmiGOfibrillar center  protein binding  nucleus  cytoplasm  DNA replication  DNA repair  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell differentiation  Ino80 complex  regulation of cell cycle  regulation of cell cycle  
Ontology : EGO-EBIfibrillar center  protein binding  nucleus  cytoplasm  DNA replication  DNA repair  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell differentiation  Ino80 complex  regulation of cell cycle  regulation of cell cycle  
NDEx NetworkYY1AP1
Atlas of Cancer Signalling NetworkYY1AP1
Wikipedia pathwaysYY1AP1
Orthology - Evolution
OrthoDB55249
GeneTree (enSembl)ENSG00000163374
Phylogenetic Trees/Animal Genes : TreeFamYY1AP1
HOVERGENQ9H869
HOGENOMQ9H869
Homologs : HomoloGeneYY1AP1
Homology/Alignments : Family Browser (UCSC)YY1AP1
Gene fusions - Rearrangements
Tumor Fusion PortalYY1AP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYY1AP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YY1AP1
dbVarYY1AP1
ClinVarYY1AP1
1000_GenomesYY1AP1 
Exome Variant ServerYY1AP1
ExAC (Exome Aggregation Consortium)ENSG00000163374
GNOMAD BrowserENSG00000163374
Genetic variants : HAPMAP55249
Genomic Variants (DGV)YY1AP1 [DGVbeta]
DECIPHERYY1AP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYY1AP1 
Mutations
ICGC Data PortalYY1AP1 
TCGA Data PortalYY1AP1 
Broad Tumor PortalYY1AP1
OASIS PortalYY1AP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYY1AP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYY1AP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YY1AP1
DgiDB (Drug Gene Interaction Database)YY1AP1
DoCM (Curated mutations)YY1AP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YY1AP1 (select a term)
intoGenYY1AP1
Cancer3DYY1AP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602531    607860   
Orphanet
DisGeNETYY1AP1
MedgenYY1AP1
Genetic Testing Registry YY1AP1
NextProtQ9H869 [Medical]
TSGene55249
GENETestsYY1AP1
Target ValidationYY1AP1
Huge Navigator YY1AP1 [HugePedia]
snp3D : Map Gene to Disease55249
BioCentury BCIQYY1AP1
ClinGenYY1AP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55249
Chemical/Pharm GKB GenePA142670546
Clinical trialYY1AP1
Miscellaneous
canSAR (ICR)YY1AP1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYY1AP1
EVEXYY1AP1
GoPubMedYY1AP1
iHOPYY1AP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:42:02 CET 2017

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