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ZAN (zonadhesin (gene/pseudogene))

Identity

Alias_nameszonadhesin
Other alias-
HGNC (Hugo) ZAN
LocusID (NCBI) 7455
Atlas_Id 75832
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100733626 and ends at 100797797 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZAN   12857
Cards
Entrez_Gene (NCBI)ZAN  7455  zonadhesin (gene/pseudogene)
Aliases
GeneCards (Weizmann)ZAN
Ensembl hg19 (Hinxton)ENSG00000146839 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146839 [Gene_View]  chr7:100733626-100797797 [Contig_View]  ZAN [Vega]
ICGC DataPortalENSG00000146839
TCGA cBioPortalZAN
AceView (NCBI)ZAN
Genatlas (Paris)ZAN
WikiGenes7455
SOURCE (Princeton)ZAN
Genetics Home Reference (NIH)ZAN
Genomic and cartography
GoldenPath hg38 (UCSC)ZAN  -     chr7:100733626-100797797 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZAN  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblZAN - 7q22.1 [CytoView hg19]  ZAN - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZAN [Mapview hg19]  ZAN [Mapview hg38]
OMIM602372   
Gene and transcription
Genbank (Entrez)AF332975 AF332976 AF332977 AF332978 AF332979
RefSeq transcript (Entrez)NM_003386 NM_173055 NM_173056 NM_173057 NM_173058 NM_173059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZAN
Cluster EST : UnigeneHs.307004 [ NCBI ]
CGAP (NCI)Hs.307004
Alternative Splicing GalleryENSG00000146839
Gene ExpressionZAN [ NCBI-GEO ]   ZAN [ EBI - ARRAY_EXPRESS ]   ZAN [ SEEK ]   ZAN [ MEM ]
Gene Expression Viewer (FireBrowse)ZAN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7455
GTEX Portal (Tissue expression)ZAN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y493   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y493  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y493
Splice isoforms : SwissVarQ9Y493
PhosPhoSitePlusQ9Y493
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    MAM_1 (PS00740)    MAM_2 (PS50060)    VWFD (PS51233)   
Domains : Interpro (EBI)ConA-like_dom    EGF-like_CS    EGF-like_dom    MAM_dom    TIL_dom    TILa_dom    Unchr_dom_Cys-rich    VWF_dom    VWF_type-D   
Domain families : Pfam (Sanger)C8 (PF08742)    MAM (PF00629)    TIL (PF01826)    TILa (PF12714)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam08742    pfam00629    pfam01826    pfam12714    pfam00094   
Domain families : Smart (EMBL)C8 (SM00832)  EGF (SM00181)  MAM (SM00137)  VWC (SM00214)  VWC_out (SM00215)  VWD (SM00216)  
Conserved Domain (NCBI)ZAN
DMDM Disease mutations7455
Blocks (Seattle)ZAN
SuperfamilyQ9Y493
Human Protein AtlasENSG00000146839
Peptide AtlasQ9Y493
HPRD03846
IPIIPI00000454   IPI00220092   IPI00220093   IPI00220096   IPI00220097   IPI00909613   IPI00220094   IPI00220095   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y493
IntAct (EBI)Q9Y493
FunCoupENSG00000146839
BioGRIDZAN
STRING (EMBL)ZAN
ZODIACZAN
Ontologies - Pathways
QuickGOQ9Y493
Ontology : AmiGOplasma membrane  binding of sperm to zona pellucida  integral component of membrane  single organismal cell-cell adhesion  
Ontology : EGO-EBIplasma membrane  binding of sperm to zona pellucida  integral component of membrane  single organismal cell-cell adhesion  
NDEx NetworkZAN
Atlas of Cancer Signalling NetworkZAN
Wikipedia pathwaysZAN
Orthology - Evolution
OrthoDB7455
GeneTree (enSembl)ENSG00000146839
Phylogenetic Trees/Animal Genes : TreeFamZAN
HOVERGENQ9Y493
HOGENOMQ9Y493
Homologs : HomoloGeneZAN
Homology/Alignments : Family Browser (UCSC)ZAN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZAN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZAN
dbVarZAN
ClinVarZAN
1000_GenomesZAN 
Exome Variant ServerZAN
ExAC (Exome Aggregation Consortium)ZAN (select the gene name)
Genetic variants : HAPMAP7455
Genomic Variants (DGV)ZAN [DGVbeta]
DECIPHERZAN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZAN 
Mutations
ICGC Data PortalZAN 
TCGA Data PortalZAN 
Broad Tumor PortalZAN
OASIS PortalZAN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZAN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZAN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZAN
DgiDB (Drug Gene Interaction Database)ZAN
DoCM (Curated mutations)ZAN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZAN (select a term)
intoGenZAN
Cancer3DZAN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602372   
Orphanet
MedgenZAN
Genetic Testing Registry ZAN
NextProtQ9Y493 [Medical]
TSGene7455
GENETestsZAN
Huge Navigator ZAN [HugePedia]
snp3D : Map Gene to Disease7455
BioCentury BCIQZAN
ClinGenZAN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7455
Chemical/Pharm GKB GenePA37446
Clinical trialZAN
Miscellaneous
canSAR (ICR)ZAN (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZAN
EVEXZAN
GoPubMedZAN
iHOPZAN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:55 CEST 2017

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