Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZAR1 (zygote arrest 1)

Identity

Alias_names3CxxC-type 6
Alias_symbol (synonym)Z3CXXC6
Other alias
HGNC (Hugo) ZAR1
LocusID (NCBI) 326340
Atlas_Id 51773
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48492269 and ends at 48496406 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZAR1   20436
Cards
Entrez_Gene (NCBI)ZAR1  326340  zygote arrest 1
AliasesZ3CXXC6
GeneCards (Weizmann)ZAR1
Ensembl hg19 (Hinxton)ENSG00000182223 [Gene_View]  chr4:48492269-48496406 [Contig_View]  ZAR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182223 [Gene_View]  chr4:48492269-48496406 [Contig_View]  ZAR1 [Vega]
ICGC DataPortalENSG00000182223
TCGA cBioPortalZAR1
AceView (NCBI)ZAR1
Genatlas (Paris)ZAR1
WikiGenes326340
SOURCE (Princeton)ZAR1
Genetics Home Reference (NIH)ZAR1
Genomic and cartography
GoldenPath hg19 (UCSC)ZAR1  -     chr4:48492269-48496406 +  4p11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZAR1  -     4p11   [Description]    (hg38-Dec_2013)
EnsemblZAR1 - 4p11 [CytoView hg19]  ZAR1 - 4p11 [CytoView hg38]
Mapping of homologs : NCBIZAR1 [Mapview hg19]  ZAR1 [Mapview hg38]
OMIM607520   
Gene and transcription
Genbank (Entrez)AI217763 AY191416 BC136265
RefSeq transcript (Entrez)NM_175619
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)ZAR1
Cluster EST : UnigeneHs.276457 [ NCBI ]
CGAP (NCI)Hs.276457
Alternative Splicing GalleryENSG00000182223
Gene ExpressionZAR1 [ NCBI-GEO ]   ZAR1 [ EBI - ARRAY_EXPRESS ]   ZAR1 [ SEEK ]   ZAR1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZAR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)326340
GTEX Portal (Tissue expression)ZAR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SH2
Splice isoforms : SwissVarQ86SH2
PhosPhoSitePlusQ86SH2
Domains : Interpro (EBI)Zar1    Znf-3CxxC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)   
Domain families : Pfam (NCBI)pfam13695   
Conserved Domain (NCBI)ZAR1
DMDM Disease mutations326340
Blocks (Seattle)ZAR1
SuperfamilyQ86SH2
Human Protein AtlasENSG00000182223
Peptide AtlasQ86SH2
HPRD09599
IPIIPI00328400   
Protein Interaction databases
DIP (DOE-UCLA)Q86SH2
IntAct (EBI)Q86SH2
FunCoupENSG00000182223
BioGRIDZAR1
STRING (EMBL)ZAR1
ZODIACZAR1
Ontologies - Pathways
QuickGOQ86SH2
Ontology : AmiGOcytoplasm  multicellular organism development  
Ontology : EGO-EBIcytoplasm  multicellular organism development  
NDEx NetworkZAR1
Atlas of Cancer Signalling NetworkZAR1
Wikipedia pathwaysZAR1
Orthology - Evolution
OrthoDB326340
GeneTree (enSembl)ENSG00000182223
Phylogenetic Trees/Animal Genes : TreeFamZAR1
HOVERGENQ86SH2
HOGENOMQ86SH2
Homologs : HomoloGeneZAR1
Homology/Alignments : Family Browser (UCSC)ZAR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZAR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZAR1
dbVarZAR1
ClinVarZAR1
1000_GenomesZAR1 
Exome Variant ServerZAR1
ExAC (Exome Aggregation Consortium)ZAR1 (select the gene name)
Genetic variants : HAPMAP326340
Genomic Variants (DGV)ZAR1 [DGVbeta]
DECIPHER (Syndromes)4:48492269-48496406  ENSG00000182223
CONAN: Copy Number AnalysisZAR1 
Mutations
ICGC Data PortalZAR1 
TCGA Data PortalZAR1 
Broad Tumor PortalZAR1
OASIS PortalZAR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZAR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZAR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZAR1
DgiDB (Drug Gene Interaction Database)ZAR1
DoCM (Curated mutations)ZAR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZAR1 (select a term)
intoGenZAR1
Cancer3DZAR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607520   
Orphanet
MedgenZAR1
Genetic Testing Registry ZAR1
NextProtQ86SH2 [Medical]
TSGene326340
GENETestsZAR1
Huge Navigator ZAR1 [HugePedia]
snp3D : Map Gene to Disease326340
BioCentury BCIQZAR1
ClinGenZAR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD326340
Chemical/Pharm GKB GenePA134938240
Clinical trialZAR1
Miscellaneous
canSAR (ICR)ZAR1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZAR1
EVEXZAR1
GoPubMedZAR1
iHOPZAR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:35 CET 2017

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