Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZBED1 (zinc finger BED-type containing 1)

Identity

Alias_namesALTE
Ac-like transposable element
Alias_symbol (synonym)TRAMP
KIAA0785
DREF
hDREF
Other alias
HGNC (Hugo) ZBED1
LocusID (NCBI) 9189
Atlas_Id 55959
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 2486414 and ends at 2500539 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED1   447
Cards
Entrez_Gene (NCBI)ZBED1  9189  zinc finger BED-type containing 1
AliasesALTE; DREF; TRAMP; hDREF
GeneCards (Weizmann)ZBED1
Ensembl hg19 (Hinxton)ENSG00000214717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214717 [Gene_View]  chrX:2486414-2500539 [Contig_View]  ZBED1 [Vega]
ICGC DataPortalENSG00000214717
TCGA cBioPortalZBED1
AceView (NCBI)ZBED1
Genatlas (Paris)ZBED1
WikiGenes9189
SOURCE (Princeton)ZBED1
Genetics Home Reference (NIH)ZBED1
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED1  -     chrX:2486414-2500539 -  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED1  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblZBED1 - Xp22.33 [CytoView hg19]  ZBED1 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIZBED1 [Mapview hg19]  ZBED1 [Mapview hg38]
OMIM300178   
Gene and transcription
Genbank (Entrez)AB018328 BC015030 BM980254 DA625185 DQ893640
RefSeq transcript (Entrez)NM_001171135 NM_001171136 NM_004729
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED1
Cluster EST : UnigeneHs.131452 [ NCBI ]
CGAP (NCI)Hs.131452
Alternative Splicing GalleryENSG00000214717
Gene ExpressionZBED1 [ NCBI-GEO ]   ZBED1 [ EBI - ARRAY_EXPRESS ]   ZBED1 [ SEEK ]   ZBED1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9189
GTEX Portal (Tissue expression)ZBED1
Human Protein AtlasENSG00000214717-ZBED1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96006   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO96006  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO96006
Splice isoforms : SwissVarO96006
PhosPhoSitePlusO96006
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)HATC_C_dom    RNaseH-like_dom    Znf_BED   
Domain families : Pfam (Sanger)Dimer_Tnp_hAT (PF05699)    zf-BED (PF02892)   
Domain families : Pfam (NCBI)pfam05699    pfam02892   
Domain families : Smart (EMBL)ZnF_BED (SM00614)  
Conserved Domain (NCBI)ZBED1
DMDM Disease mutations9189
Blocks (Seattle)ZBED1
PDB (SRS)2CT5   
PDB (PDBSum)2CT5   
PDB (IMB)2CT5   
PDB (RSDB)2CT5   
Structural Biology KnowledgeBase2CT5   
SCOP (Structural Classification of Proteins)2CT5   
CATH (Classification of proteins structures)2CT5   
SuperfamilyO96006
Human Protein Atlas [tissue]ENSG00000214717-ZBED1 [tissue]
Peptide AtlasO96006
HPRD02170
IPIIPI00006203   IPI00945145   
Protein Interaction databases
DIP (DOE-UCLA)O96006
IntAct (EBI)O96006
FunCoupENSG00000214717
BioGRIDZBED1
STRING (EMBL)ZBED1
ZODIACZBED1
Ontologies - Pathways
QuickGOO96006
Ontology : AmiGOnuclear chromosome  RNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  transposase activity  protein binding  nucleoplasm  centrosome  regulation of transcription from RNA polymerase II promoter  nuclear membrane  identical protein binding  metal ion binding  protein dimerization activity  
Ontology : EGO-EBInuclear chromosome  RNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  transposase activity  protein binding  nucleoplasm  centrosome  regulation of transcription from RNA polymerase II promoter  nuclear membrane  identical protein binding  metal ion binding  protein dimerization activity  
NDEx NetworkZBED1
Atlas of Cancer Signalling NetworkZBED1
Wikipedia pathwaysZBED1
Orthology - Evolution
OrthoDB9189
GeneTree (enSembl)ENSG00000214717
Phylogenetic Trees/Animal Genes : TreeFamZBED1
HOVERGENO96006
HOGENOMO96006
Homologs : HomoloGeneZBED1
Homology/Alignments : Family Browser (UCSC)ZBED1
Gene fusions - Rearrangements
Tumor Fusion PortalZBED1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED1
dbVarZBED1
ClinVarZBED1
1000_GenomesZBED1 
Exome Variant ServerZBED1
ExAC (Exome Aggregation Consortium)ENSG00000214717
GNOMAD BrowserENSG00000214717
Genetic variants : HAPMAP9189
Genomic Variants (DGV)ZBED1 [DGVbeta]
DECIPHERZBED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED1 
Mutations
ICGC Data PortalZBED1 
TCGA Data PortalZBED1 
Broad Tumor PortalZBED1
OASIS PortalZBED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZBED1
DgiDB (Drug Gene Interaction Database)ZBED1
DoCM (Curated mutations)ZBED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED1 (select a term)
intoGenZBED1
Cancer3DZBED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300178   
Orphanet
DisGeNETZBED1
MedgenZBED1
Genetic Testing Registry ZBED1
NextProtO96006 [Medical]
TSGene9189
GENETestsZBED1
Target ValidationZBED1
Huge Navigator ZBED1 [HugePedia]
snp3D : Map Gene to Disease9189
BioCentury BCIQZBED1
ClinGenZBED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9189
Chemical/Pharm GKB GenePA24753
Clinical trialZBED1
Miscellaneous
canSAR (ICR)ZBED1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED1
EVEXZBED1
GoPubMedZBED1
iHOPZBED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:42:03 CET 2017

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