Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZBED1 (zinc finger BED-type containing 1)

Identity

Alias (NCBI)ALTE
DREF
TRAMP
hDREF
HGNC (Hugo) ZBED1
HGNC Alias symbTRAMP
KIAA0785
DREF
hDREF
HGNC Previous nameALTE
HGNC Previous nameAc-like transposable element
LocusID (NCBI) 9189
Atlas_Id 55959
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 2486435 and ends at 2500976 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  P2RY8/ZBED1 (Xp22)


External links

 

Nomenclature
HGNC (Hugo)ZBED1   447
Cards
Entrez_Gene (NCBI)ZBED1    zinc finger BED-type containing 1
AliasesALTE; DREF; TRAMP; hDREF
GeneCards (Weizmann)ZBED1
Ensembl hg19 (Hinxton)ENSG00000214717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214717 [Gene_View]  ENSG00000214717 [Sequence]  chrX:2486435-2500976 [Contig_View]  ZBED1 [Vega]
ICGC DataPortalENSG00000214717
TCGA cBioPortalZBED1
AceView (NCBI)ZBED1
Genatlas (Paris)ZBED1
SOURCE (Princeton)ZBED1
Genetics Home Reference (NIH)ZBED1
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED1  -     chrX:2486435-2500976 -  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED1  -     Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPathZBED1 - Xp22.33 [CytoView hg19]  ZBED1 - Xp22.33 [CytoView hg38]
ImmunoBaseENSG00000214717
Genome Data Viewer NCBIZBED1 [Mapview hg19]  
OMIM300178   
Gene and transcription
Genbank (Entrez)AB018328 BC015030 BM980254 DA625185 Y16947
RefSeq transcript (Entrez)NM_001171135 NM_001171136 NM_004729
Consensus coding sequences : CCDS (NCBI)ZBED1
Gene ExpressionZBED1 [ NCBI-GEO ]   ZBED1 [ EBI - ARRAY_EXPRESS ]   ZBED1 [ SEEK ]   ZBED1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED1 [ Firebrowse - Broad ]
GenevisibleExpression of ZBED1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9189
GTEX Portal (Tissue expression)ZBED1
Human Protein AtlasENSG00000214717-ZBED1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO96006   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO96006  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO96006
PhosPhoSitePlusO96006
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)HATC_C_dom    RNaseH-like_sf    Znf_BED    Znf_C2H2_sf   
Domain families : Pfam (Sanger)Dimer_Tnp_hAT (PF05699)    zf-BED (PF02892)   
Domain families : Pfam (NCBI)pfam05699    pfam02892   
Conserved Domain (NCBI)ZBED1
PDB (RSDB)2CT5   
PDB Europe2CT5   
PDB (PDBSum)2CT5   
PDB (IMB)2CT5   
Structural Biology KnowledgeBase2CT5   
SCOP (Structural Classification of Proteins)2CT5   
CATH (Classification of proteins structures)2CT5   
SuperfamilyO96006
AlphaFold pdb e-kbO96006   
Human Protein Atlas [tissue]ENSG00000214717-ZBED1 [tissue]
HPRD02170
Protein Interaction databases
DIP (DOE-UCLA)O96006
IntAct (EBI)O96006
BioGRIDZBED1
STRING (EMBL)ZBED1
ZODIACZBED1
Ontologies - Pathways
QuickGOO96006
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  transcription coregulator activity  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  centrosome  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  PML body  SUMO transferase activity  nuclear membrane  identical protein binding  sequence-specific DNA binding  negative regulation by host of viral genome replication  positive regulation of transcription by RNA polymerase II  metal ion binding  protein dimerization activity  SUMO ligase activity  protein autosumoylation  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  transcription coregulator activity  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  centrosome  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  PML body  SUMO transferase activity  nuclear membrane  identical protein binding  sequence-specific DNA binding  negative regulation by host of viral genome replication  positive regulation of transcription by RNA polymerase II  metal ion binding  protein dimerization activity  SUMO ligase activity  protein autosumoylation  sequence-specific double-stranded DNA binding  
NDEx NetworkZBED1
Atlas of Cancer Signalling NetworkZBED1
Wikipedia pathwaysZBED1
Orthology - Evolution
OrthoDB9189
GeneTree (enSembl)ENSG00000214717
Phylogenetic Trees/Animal Genes : TreeFamZBED1
Homologs : HomoloGeneZBED1
Homology/Alignments : Family Browser (UCSC)ZBED1
Gene fusions - Rearrangements
Fusion : QuiverZBED1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED1
dbVarZBED1
ClinVarZBED1
MonarchZBED1
1000_GenomesZBED1 
Exome Variant ServerZBED1
GNOMAD BrowserENSG00000214717
Varsome BrowserZBED1
ACMGZBED1 variants
VarityO96006
Genomic Variants (DGV)ZBED1 [DGVbeta]
DECIPHERZBED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED1 
Mutations
ICGC Data PortalZBED1 
TCGA Data PortalZBED1 
Broad Tumor PortalZBED1
OASIS PortalZBED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZBED1
Mutations and Diseases : HGMDZBED1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZBED1
DgiDB (Drug Gene Interaction Database)ZBED1
DoCM (Curated mutations)ZBED1
CIViC (Clinical Interpretations of Variants in Cancer)ZBED1
Cancer3DZBED1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300178   
Orphanet
DisGeNETZBED1
MedgenZBED1
Genetic Testing Registry ZBED1
NextProtO96006 [Medical]
GENETestsZBED1
Target ValidationZBED1
Huge Navigator ZBED1 [HugePedia]
ClinGenZBED1
Clinical trials, drugs, therapy
MyCancerGenomeZBED1
Protein Interactions : CTDZBED1
Pharm GKB GenePA24753
PharosO96006
Clinical trialZBED1
Miscellaneous
canSAR (ICR)ZBED1
HarmonizomeZBED1
DataMed IndexZBED1
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZBED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:38:44 CEST 2021

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