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ZBED2 (zinc finger BED-type containing 2)

Identity

Alias_symbol (synonym)MGC10796
Other alias-
HGNC (Hugo) ZBED2
LocusID (NCBI) 79413
Atlas_Id 75837
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 111592900 and ends at 111595335 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED2   20710
Cards
Entrez_Gene (NCBI)ZBED2  79413  zinc finger BED-type containing 2
Aliases
GeneCards (Weizmann)ZBED2
Ensembl hg19 (Hinxton)ENSG00000177494 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177494 [Gene_View]  chr3:111592900-111595335 [Contig_View]  ZBED2 [Vega]
ICGC DataPortalENSG00000177494
TCGA cBioPortalZBED2
AceView (NCBI)ZBED2
Genatlas (Paris)ZBED2
WikiGenes79413
SOURCE (Princeton)ZBED2
Genetics Home Reference (NIH)ZBED2
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED2  -     chr3:111592900-111595335 -  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED2  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblZBED2 - 3q13.13 [CytoView hg19]  ZBED2 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBIZBED2 [Mapview hg19]  ZBED2 [Mapview hg38]
OMIM615246   
Gene and transcription
Genbank (Entrez)BC003536 BC071956 BE740032 BM847001 CV575511
RefSeq transcript (Entrez)NM_024508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED2
Cluster EST : UnigeneHs.136912 [ NCBI ]
CGAP (NCI)Hs.136912
Alternative Splicing GalleryENSG00000177494
Gene ExpressionZBED2 [ NCBI-GEO ]   ZBED2 [ EBI - ARRAY_EXPRESS ]   ZBED2 [ SEEK ]   ZBED2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79413
GTEX Portal (Tissue expression)ZBED2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTP6
Splice isoforms : SwissVarQ9BTP6
PhosPhoSitePlusQ9BTP6
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)Znf_BED   
Domain families : Pfam (Sanger)zf-BED (PF02892)   
Domain families : Pfam (NCBI)pfam02892   
Domain families : Smart (EMBL)ZnF_BED (SM00614)  
Conserved Domain (NCBI)ZBED2
DMDM Disease mutations79413
Blocks (Seattle)ZBED2
PDB (SRS)2DJR   
PDB (PDBSum)2DJR   
PDB (IMB)2DJR   
PDB (RSDB)2DJR   
Structural Biology KnowledgeBase2DJR   
SCOP (Structural Classification of Proteins)2DJR   
CATH (Classification of proteins structures)2DJR   
SuperfamilyQ9BTP6
Human Protein AtlasENSG00000177494
Peptide AtlasQ9BTP6
HPRD15686
IPIIPI00001576   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTP6
IntAct (EBI)Q9BTP6
FunCoupENSG00000177494
BioGRIDZBED2
STRING (EMBL)ZBED2
ZODIACZBED2
Ontologies - Pathways
QuickGOQ9BTP6
Ontology : AmiGODNA binding  metal ion binding  
Ontology : EGO-EBIDNA binding  metal ion binding  
NDEx NetworkZBED2
Atlas of Cancer Signalling NetworkZBED2
Wikipedia pathwaysZBED2
Orthology - Evolution
OrthoDB79413
GeneTree (enSembl)ENSG00000177494
Phylogenetic Trees/Animal Genes : TreeFamZBED2
HOVERGENQ9BTP6
HOGENOMQ9BTP6
Homologs : HomoloGeneZBED2
Homology/Alignments : Family Browser (UCSC)ZBED2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED2
dbVarZBED2
ClinVarZBED2
1000_GenomesZBED2 
Exome Variant ServerZBED2
ExAC (Exome Aggregation Consortium)ZBED2 (select the gene name)
Genetic variants : HAPMAP79413
Genomic Variants (DGV)ZBED2 [DGVbeta]
DECIPHERZBED2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED2 
Mutations
ICGC Data PortalZBED2 
TCGA Data PortalZBED2 
Broad Tumor PortalZBED2
OASIS PortalZBED2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBED2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBED2
DgiDB (Drug Gene Interaction Database)ZBED2
DoCM (Curated mutations)ZBED2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED2 (select a term)
intoGenZBED2
Cancer3DZBED2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615246   
Orphanet
MedgenZBED2
Genetic Testing Registry ZBED2
NextProtQ9BTP6 [Medical]
TSGene79413
GENETestsZBED2
Target ValidationZBED2
Huge Navigator ZBED2 [HugePedia]
snp3D : Map Gene to Disease79413
BioCentury BCIQZBED2
ClinGenZBED2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79413
Chemical/Pharm GKB GenePA134879520
Clinical trialZBED2
Miscellaneous
canSAR (ICR)ZBED2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED2
EVEXZBED2
GoPubMedZBED2
iHOPZBED2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:22 CEST 2017

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