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ZBED3 (zinc finger BED-type containing 3)

Identity

Alias_symbol (synonym)MGC15435
Other alias-
HGNC (Hugo) ZBED3
LocusID (NCBI) 84327
Atlas_Id 55409
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 77076677 and ends at 77087246 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED3   20711
Cards
Entrez_Gene (NCBI)ZBED3  84327  zinc finger BED-type containing 3
Aliases
GeneCards (Weizmann)ZBED3
Ensembl hg19 (Hinxton)ENSG00000132846 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132846 [Gene_View]  chr5:77076677-77087246 [Contig_View]  ZBED3 [Vega]
ICGC DataPortalENSG00000132846
TCGA cBioPortalZBED3
AceView (NCBI)ZBED3
Genatlas (Paris)ZBED3
WikiGenes84327
SOURCE (Princeton)ZBED3
Genetics Home Reference (NIH)ZBED3
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED3  -     chr5:77076677-77087246 -  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED3  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblZBED3 - 5q13.3 [CytoView hg19]  ZBED3 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIZBED3 [Mapview hg19]  ZBED3 [Mapview hg38]
OMIM615250   
Gene and transcription
Genbank (Entrez)AK223624 BC007239 BF508552 BY798736 DN998543
RefSeq transcript (Entrez)NM_001329564 NM_032367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED3
Cluster EST : UnigeneHs.584988 [ NCBI ]
CGAP (NCI)Hs.584988
Alternative Splicing GalleryENSG00000132846
Gene ExpressionZBED3 [ NCBI-GEO ]   ZBED3 [ EBI - ARRAY_EXPRESS ]   ZBED3 [ SEEK ]   ZBED3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84327
GTEX Portal (Tissue expression)ZBED3
Human Protein AtlasENSG00000132846-ZBED3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IU2
Splice isoforms : SwissVarQ96IU2
PhosPhoSitePlusQ96IU2
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)ZBED3    Znf_BED   
Domain families : Pfam (Sanger)zf-BED (PF02892)   
Domain families : Pfam (NCBI)pfam02892   
Domain families : Smart (EMBL)ZnF_BED (SM00614)  
Conserved Domain (NCBI)ZBED3
DMDM Disease mutations84327
Blocks (Seattle)ZBED3
SuperfamilyQ96IU2
Human Protein Atlas [tissue]ENSG00000132846-ZBED3 [tissue]
Peptide AtlasQ96IU2
HPRD15687
IPIIPI00063826   IPI00964186   
Protein Interaction databases
DIP (DOE-UCLA)Q96IU2
IntAct (EBI)Q96IU2
FunCoupENSG00000132846
BioGRIDZBED3
STRING (EMBL)ZBED3
ZODIACZBED3
Ontologies - Pathways
QuickGOQ96IU2
Ontology : AmiGOnegative regulation of protein phosphorylation  DNA binding  cytosol  membrane  Wnt signaling pathway  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  protein stabilization  positive regulation of canonical Wnt signaling pathway  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBInegative regulation of protein phosphorylation  DNA binding  cytosol  membrane  Wnt signaling pathway  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  protein stabilization  positive regulation of canonical Wnt signaling pathway  positive regulation of protein targeting to mitochondrion  
NDEx NetworkZBED3
Atlas of Cancer Signalling NetworkZBED3
Wikipedia pathwaysZBED3
Orthology - Evolution
OrthoDB84327
GeneTree (enSembl)ENSG00000132846
Phylogenetic Trees/Animal Genes : TreeFamZBED3
HOVERGENQ96IU2
HOGENOMQ96IU2
Homologs : HomoloGeneZBED3
Homology/Alignments : Family Browser (UCSC)ZBED3
Gene fusions - Rearrangements
Tumor Fusion PortalZBED3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED3
dbVarZBED3
ClinVarZBED3
1000_GenomesZBED3 
Exome Variant ServerZBED3
ExAC (Exome Aggregation Consortium)ENSG00000132846
GNOMAD BrowserENSG00000132846
Genetic variants : HAPMAP84327
Genomic Variants (DGV)ZBED3 [DGVbeta]
DECIPHERZBED3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED3 
Mutations
ICGC Data PortalZBED3 
TCGA Data PortalZBED3 
Broad Tumor PortalZBED3
OASIS PortalZBED3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBED3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBED3
DgiDB (Drug Gene Interaction Database)ZBED3
DoCM (Curated mutations)ZBED3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED3 (select a term)
intoGenZBED3
Cancer3DZBED3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615250   
Orphanet
DisGeNETZBED3
MedgenZBED3
Genetic Testing Registry ZBED3
NextProtQ96IU2 [Medical]
TSGene84327
GENETestsZBED3
Target ValidationZBED3
Huge Navigator ZBED3 [HugePedia]
snp3D : Map Gene to Disease84327
BioCentury BCIQZBED3
ClinGenZBED3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84327
Chemical/Pharm GKB GenePA134974972
Clinical trialZBED3
Miscellaneous
canSAR (ICR)ZBED3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED3
EVEXZBED3
GoPubMedZBED3
iHOPZBED3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:42:03 CET 2017

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