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ZBED4 (zinc finger BED-type containing 4)

Identity

Alias_symbol (synonym)KIAA0637
Other alias-
HGNC (Hugo) ZBED4
LocusID (NCBI) 9889
Atlas_Id 75840
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 49853849 and ends at 49890078 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALG12 (22q13.33) / ZBED4 (22q13.33)C22orf34 (22q13.33) / ZBED4 (22q13.33)ZBED4 (22q13.33) / DCTN1 (2p13.1)
ZBED4 (22q13.33) / SLC4A5 (2p13.1)ZBED4 (22q13.33) / SPAG4 (20q11.22)ZBED4 (22q13.33) / SUGCT (7p14.1)
ZBED4 (22q13.33) / ZBED4 (22q13.33)ZBED4 SPAG4ZBED4 C7orf10

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED4   20721
Cards
Entrez_Gene (NCBI)ZBED4  9889  zinc finger BED-type containing 4
Aliases
GeneCards (Weizmann)ZBED4
Ensembl hg19 (Hinxton)ENSG00000100426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100426 [Gene_View]  chr22:49853849-49890078 [Contig_View]  ZBED4 [Vega]
ICGC DataPortalENSG00000100426
TCGA cBioPortalZBED4
AceView (NCBI)ZBED4
Genatlas (Paris)ZBED4
WikiGenes9889
SOURCE (Princeton)ZBED4
Genetics Home Reference (NIH)ZBED4
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED4  -     chr22:49853849-49890078 +  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED4  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblZBED4 - 22q13.33 [CytoView hg19]  ZBED4 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBIZBED4 [Mapview hg19]  ZBED4 [Mapview hg38]
OMIM612552   
Gene and transcription
Genbank (Entrez)AA809789 AB014537 BC117670 BC117671 BC167155
RefSeq transcript (Entrez)NM_014838
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED4
Cluster EST : UnigeneHs.475208 [ NCBI ]
CGAP (NCI)Hs.475208
Alternative Splicing GalleryENSG00000100426
Gene ExpressionZBED4 [ NCBI-GEO ]   ZBED4 [ EBI - ARRAY_EXPRESS ]   ZBED4 [ SEEK ]   ZBED4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9889
GTEX Portal (Tissue expression)ZBED4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75132   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75132  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75132
Splice isoforms : SwissVarO75132
PhosPhoSitePlusO75132
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)HATC_C_dom    RNaseH-like_dom    Znf_BED   
Domain families : Pfam (Sanger)Dimer_Tnp_hAT (PF05699)    zf-BED (PF02892)   
Domain families : Pfam (NCBI)pfam05699    pfam02892   
Domain families : Smart (EMBL)ZnF_BED (SM00614)  
Conserved Domain (NCBI)ZBED4
DMDM Disease mutations9889
Blocks (Seattle)ZBED4
SuperfamilyO75132
Human Protein AtlasENSG00000100426
Peptide AtlasO75132
HPRD11692
IPIIPI00006610   
Protein Interaction databases
DIP (DOE-UCLA)O75132
IntAct (EBI)O75132
FunCoupENSG00000100426
BioGRIDZBED4
STRING (EMBL)ZBED4
ZODIACZBED4
Ontologies - Pathways
QuickGOO75132
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  metal ion binding  protein dimerization activity  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  metal ion binding  protein dimerization activity  
NDEx NetworkZBED4
Atlas of Cancer Signalling NetworkZBED4
Wikipedia pathwaysZBED4
Orthology - Evolution
OrthoDB9889
GeneTree (enSembl)ENSG00000100426
Phylogenetic Trees/Animal Genes : TreeFamZBED4
HOVERGENO75132
HOGENOMO75132
Homologs : HomoloGeneZBED4
Homology/Alignments : Family Browser (UCSC)ZBED4
Gene fusions - Rearrangements
Fusion: TCGAZBED4 SPAG4
Fusion: TCGAZBED4 C7orf10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED4
dbVarZBED4
ClinVarZBED4
1000_GenomesZBED4 
Exome Variant ServerZBED4
ExAC (Exome Aggregation Consortium)ZBED4 (select the gene name)
Genetic variants : HAPMAP9889
Genomic Variants (DGV)ZBED4 [DGVbeta]
DECIPHERZBED4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED4 
Mutations
ICGC Data PortalZBED4 
TCGA Data PortalZBED4 
Broad Tumor PortalZBED4
OASIS PortalZBED4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBED4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBED4
DgiDB (Drug Gene Interaction Database)ZBED4
DoCM (Curated mutations)ZBED4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED4 (select a term)
intoGenZBED4
Cancer3DZBED4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612552   
Orphanet
MedgenZBED4
Genetic Testing Registry ZBED4
NextProtO75132 [Medical]
TSGene9889
GENETestsZBED4
Target ValidationZBED4
Huge Navigator ZBED4 [HugePedia]
snp3D : Map Gene to Disease9889
BioCentury BCIQZBED4
ClinGenZBED4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9889
Chemical/Pharm GKB GenePA134948378
Clinical trialZBED4
Miscellaneous
canSAR (ICR)ZBED4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED4
EVEXZBED4
GoPubMedZBED4
iHOPZBED4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:04 CEST 2017

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