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ZBED5 (zinc finger, BED-type containing 5)

Identity

Alias_symbol (synonym)Buster1
Other alias
HGNC (Hugo) ZBED5
LocusID (NCBI) 58486
Atlas_Id 75841
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 10874251 and ends at 10879620 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZBED5 (11p15.3) / LOC439994 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED5   30803
Cards
Entrez_Gene (NCBI)ZBED5  58486  zinc finger, BED-type containing 5
AliasesBuster1
GeneCards (Weizmann)ZBED5
Ensembl hg19 (Hinxton)ENSG00000236287 [Gene_View]  chr11:10874251-10879620 [Contig_View]  ZBED5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000236287 [Gene_View]  chr11:10874251-10879620 [Contig_View]  ZBED5 [Vega]
ICGC DataPortalENSG00000236287
TCGA cBioPortalZBED5
AceView (NCBI)ZBED5
Genatlas (Paris)ZBED5
WikiGenes58486
SOURCE (Princeton)ZBED5
Genetics Home Reference (NIH)ZBED5
Genomic and cartography
GoldenPath hg19 (UCSC)ZBED5  -     chr11:10874251-10879620 -  11p15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZBED5  -     11p15.3   [Description]    (hg38-Dec_2013)
EnsemblZBED5 - 11p15.3 [CytoView hg19]  ZBED5 - 11p15.3 [CytoView hg38]
Mapping of homologs : NCBIZBED5 [Mapview hg19]  ZBED5 [Mapview hg38]
OMIM615251   
Gene and transcription
Genbank (Entrez)AF205600 AK022942 AK025407 AK025829 AK123233
RefSeq transcript (Entrez)NM_001143667 NM_021211
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)ZBED5
Cluster EST : UnigeneHs.728118 [ NCBI ]
CGAP (NCI)Hs.728118
Alternative Splicing GalleryENSG00000236287
Gene ExpressionZBED5 [ NCBI-GEO ]   ZBED5 [ EBI - ARRAY_EXPRESS ]   ZBED5 [ SEEK ]   ZBED5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58486
GTEX Portal (Tissue expression)ZBED5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AG3
Splice isoforms : SwissVarQ49AG3
PhosPhoSitePlusQ49AG3
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)RNaseH-like_dom    Znf_BED   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZBED5
DMDM Disease mutations58486
Blocks (Seattle)ZBED5
SuperfamilyQ49AG3
Human Protein AtlasENSG00000236287
Peptide AtlasQ49AG3
HPRD17429
IPIIPI00009655   IPI00977257   IPI00985366   IPI00984115   IPI00983510   IPI00984809   
Protein Interaction databases
DIP (DOE-UCLA)Q49AG3
IntAct (EBI)Q49AG3
FunCoupENSG00000236287
BioGRIDZBED5
STRING (EMBL)ZBED5
ZODIACZBED5
Ontologies - Pathways
QuickGOQ49AG3
Ontology : AmiGODNA binding  metal ion binding  
Ontology : EGO-EBIDNA binding  metal ion binding  
NDEx NetworkZBED5
Atlas of Cancer Signalling NetworkZBED5
Wikipedia pathwaysZBED5
Orthology - Evolution
OrthoDB58486
GeneTree (enSembl)ENSG00000236287
Phylogenetic Trees/Animal Genes : TreeFamZBED5
HOVERGENQ49AG3
HOGENOMQ49AG3
Homologs : HomoloGeneZBED5
Homology/Alignments : Family Browser (UCSC)ZBED5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED5
dbVarZBED5
ClinVarZBED5
1000_GenomesZBED5 
Exome Variant ServerZBED5
ExAC (Exome Aggregation Consortium)ZBED5 (select the gene name)
Genetic variants : HAPMAP58486
Genomic Variants (DGV)ZBED5 [DGVbeta]
DECIPHER (Syndromes)11:10874251-10879620  ENSG00000236287
CONAN: Copy Number AnalysisZBED5 
Mutations
ICGC Data PortalZBED5 
TCGA Data PortalZBED5 
Broad Tumor PortalZBED5
OASIS PortalZBED5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBED5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ZBED5
DgiDB (Drug Gene Interaction Database)ZBED5
DoCM (Curated mutations)ZBED5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED5 (select a term)
intoGenZBED5
Cancer3DZBED5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615251   
Orphanet
MedgenZBED5
Genetic Testing Registry ZBED5
NextProtQ49AG3 [Medical]
TSGene58486
GENETestsZBED5
Huge Navigator ZBED5 [HugePedia]
snp3D : Map Gene to Disease58486
BioCentury BCIQZBED5
ClinGenZBED5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58486
Chemical/Pharm GKB GenePA147357120
Clinical trialZBED5
Miscellaneous
canSAR (ICR)ZBED5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED5
EVEXZBED5
GoPubMedZBED5
iHOPZBED5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:02 CET 2017

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