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ZBED6 (zinc finger BED-type containing 6)

Identity

Other aliasMGR
HGNC (Hugo) ZBED6
LocusID (NCBI) 100381270
Atlas_Id 55527
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 203797523 and ends at 203801072 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED6   33273
Cards
Entrez_Gene (NCBI)ZBED6  100381270  zinc finger BED-type containing 6
AliasesMGR
GeneCards (Weizmann)ZBED6
Ensembl hg19 (Hinxton)ENSG00000257315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257315 [Gene_View]  chr1:203797523-203801072 [Contig_View]  ZBED6 [Vega]
ICGC DataPortalENSG00000257315
TCGA cBioPortalZBED6
AceView (NCBI)ZBED6
Genatlas (Paris)ZBED6
WikiGenes100381270
SOURCE (Princeton)ZBED6
Genetics Home Reference (NIH)ZBED6
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED6  -     chr1:203797523-203801072 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED6  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblZBED6 - 1q32.1 [CytoView hg19]  ZBED6 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIZBED6 [Mapview hg19]  ZBED6 [Mapview hg38]
OMIM613512   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001174108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED6
Alternative Splicing GalleryENSG00000257315
Gene ExpressionZBED6 [ NCBI-GEO ]   ZBED6 [ EBI - ARRAY_EXPRESS ]   ZBED6 [ SEEK ]   ZBED6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100381270
GTEX Portal (Tissue expression)ZBED6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86452   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86452  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86452
Splice isoforms : SwissVarP86452
PhosPhoSitePlusP86452
Domaine pattern : Prosite (Expaxy)ZF_BED (PS50808)   
Domains : Interpro (EBI)HATC_C_dom    RNaseH-like_dom    Znf_BED   
Domain families : Pfam (Sanger)Dimer_Tnp_hAT (PF05699)    zf-BED (PF02892)   
Domain families : Pfam (NCBI)pfam05699    pfam02892   
Domain families : Smart (EMBL)ZnF_BED (SM00614)  
Conserved Domain (NCBI)ZBED6
DMDM Disease mutations100381270
Blocks (Seattle)ZBED6
SuperfamilyP86452
Human Protein AtlasENSG00000257315
Peptide AtlasP86452
IPIIPI00955882   
Protein Interaction databases
DIP (DOE-UCLA)P86452
IntAct (EBI)P86452
FunCoupENSG00000257315
BioGRIDZBED6
STRING (EMBL)ZBED6
ZODIACZBED6
Ontologies - Pathways
QuickGOP86452
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  negative regulation of transcription, DNA-templated  metal ion binding  protein dimerization activity  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  negative regulation of transcription, DNA-templated  metal ion binding  protein dimerization activity  
NDEx NetworkZBED6
Atlas of Cancer Signalling NetworkZBED6
Wikipedia pathwaysZBED6
Orthology - Evolution
OrthoDB100381270
GeneTree (enSembl)ENSG00000257315
Phylogenetic Trees/Animal Genes : TreeFamZBED6
HOVERGENP86452
HOGENOMP86452
Homologs : HomoloGeneZBED6
Homology/Alignments : Family Browser (UCSC)ZBED6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED6
dbVarZBED6
ClinVarZBED6
1000_GenomesZBED6 
Exome Variant ServerZBED6
ExAC (Exome Aggregation Consortium)ZBED6 (select the gene name)
Genetic variants : HAPMAP100381270
Genomic Variants (DGV)ZBED6 [DGVbeta]
DECIPHERZBED6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED6 
Mutations
ICGC Data PortalZBED6 
TCGA Data PortalZBED6 
Broad Tumor PortalZBED6
OASIS PortalZBED6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBED6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBED6
DgiDB (Drug Gene Interaction Database)ZBED6
DoCM (Curated mutations)ZBED6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED6 (select a term)
intoGenZBED6
Cancer3DZBED6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613512   
Orphanet
MedgenZBED6
Genetic Testing Registry ZBED6
NextProtP86452 [Medical]
TSGene100381270
GENETestsZBED6
Target ValidationZBED6
Huge Navigator ZBED6 [HugePedia]
snp3D : Map Gene to Disease100381270
BioCentury BCIQZBED6
ClinGenZBED6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100381270
Chemical/Pharm GKB GenePA165752811
Clinical trialZBED6
Miscellaneous
canSAR (ICR)ZBED6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED6
EVEXZBED6
GoPubMedZBED6
iHOPZBED6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:15 CEST 2017

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