Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZBED6CL (ZBED6 C-terminal like)

Identity

Alias (NCBI)C7orf29
HGNC (Hugo) ZBED6CL
HGNC Previous nameC7orf29
HGNC Previous namechromosome 7 open reading frame 29
LocusID (NCBI) 113763
Atlas_Id 75844
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150329849 and ends at 150332721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZBED6CL   21720
Cards
Entrez_Gene (NCBI)ZBED6CL    ZBED6 C-terminal like
AliasesC7orf29
GeneCards (Weizmann)ZBED6CL
Ensembl hg19 (Hinxton)ENSG00000188707 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188707 [Gene_View]  ENSG00000188707 [Sequence]  chr7:150329849-150332721 [Contig_View]  ZBED6CL [Vega]
ICGC DataPortalENSG00000188707
TCGA cBioPortalZBED6CL
AceView (NCBI)ZBED6CL
Genatlas (Paris)ZBED6CL
SOURCE (Princeton)ZBED6CL
Genetics Home Reference (NIH)ZBED6CL
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED6CL  -     chr7:150329849-150332721 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED6CL  -     7q36.1   [Description]    (hg19-Feb_2009)
GoldenPathZBED6CL - 7q36.1 [CytoView hg19]  ZBED6CL - 7q36.1 [CytoView hg38]
ImmunoBaseENSG00000188707
genome Data Viewer NCBIZBED6CL [Mapview hg19]  
OMIM615252   
Gene and transcription
Genbank (Entrez)AL832660 BC011406
RefSeq transcript (Entrez)NM_138434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED6CL
Alternative Splicing GalleryENSG00000188707
Gene ExpressionZBED6CL [ NCBI-GEO ]   ZBED6CL [ EBI - ARRAY_EXPRESS ]   ZBED6CL [ SEEK ]   ZBED6CL [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED6CL [ Firebrowse - Broad ]
GenevisibleExpression of ZBED6CL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113763
GTEX Portal (Tissue expression)ZBED6CL
Human Protein AtlasENSG00000188707-ZBED6CL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FA7
Splice isoforms : SwissVarQ96FA7
PhosPhoSitePlusQ96FA7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZBED6CL
Blocks (Seattle)ZBED6CL
SuperfamilyQ96FA7
Human Protein Atlas [tissue]ENSG00000188707-ZBED6CL [tissue]
Peptide AtlasQ96FA7
HPRD12917
IPIIPI00061876   
Protein Interaction databases
DIP (DOE-UCLA)Q96FA7
IntAct (EBI)Q96FA7
BioGRIDZBED6CL
STRING (EMBL)ZBED6CL
ZODIACZBED6CL
Ontologies - Pathways
QuickGOQ96FA7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkZBED6CL
Atlas of Cancer Signalling NetworkZBED6CL
Wikipedia pathwaysZBED6CL
Orthology - Evolution
OrthoDB113763
GeneTree (enSembl)ENSG00000188707
Phylogenetic Trees/Animal Genes : TreeFamZBED6CL
HOGENOMQ96FA7
Homologs : HomoloGeneZBED6CL
Homology/Alignments : Family Browser (UCSC)ZBED6CL
Gene fusions - Rearrangements
Fusion : QuiverZBED6CL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED6CL [hg38]
dbVarZBED6CL
ClinVarZBED6CL
MonarchZBED6CL
1000_GenomesZBED6CL 
Exome Variant ServerZBED6CL
GNOMAD BrowserENSG00000188707
Varsome BrowserZBED6CL
Genomic Variants (DGV)ZBED6CL [DGVbeta]
DECIPHERZBED6CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED6CL 
Mutations
ICGC Data PortalZBED6CL 
TCGA Data PortalZBED6CL 
Broad Tumor PortalZBED6CL
OASIS PortalZBED6CL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBED6CL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZBED6CL
Mutations and Diseases : HGMDZBED6CL
BioMutasearch ZBED6CL
DgiDB (Drug Gene Interaction Database)ZBED6CL
DoCM (Curated mutations)ZBED6CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED6CL (select a term)
intoGenZBED6CL
Cancer3DZBED6CL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615252   
Orphanet
DisGeNETZBED6CL
MedgenZBED6CL
Genetic Testing Registry ZBED6CL
NextProtQ96FA7 [Medical]
GENETestsZBED6CL
Target ValidationZBED6CL
Huge Navigator ZBED6CL [HugePedia]
ClinGenZBED6CL
Clinical trials, drugs, therapy
MyCancerGenomeZBED6CL
Protein Interactions : CTD
Pharm GKB GenePA134942566
Clinical trialZBED6CL
Miscellaneous
canSAR (ICR)ZBED6CL (select the gene name)
HarmonizomeZBED6CL
DataMed IndexZBED6CL
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED6CL
EVEXZBED6CL
GoPubMedZBED6CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:35:09 CET 2020
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