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ZBED8 (zinc finger BED-type containing 8)

Identity

Alias_namesC5orf54
chromosome 5 open reading frame 54
Alias_symbol (synonym)Buster3
Other alias
HGNC (Hugo) ZBED8
LocusID (NCBI) 63920
Atlas_Id 75845
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 160393148 and ends at 160400097 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KLC1 (14q32.33) / ZBED8 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED8   30804
Cards
Entrez_Gene (NCBI)ZBED8  63920  zinc finger BED-type containing 8
AliasesBuster3; C5orf54
GeneCards (Weizmann)ZBED8
Ensembl hg19 (Hinxton)ENSG00000221886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221886 [Gene_View]  chr5:160393148-160400097 [Contig_View]  ZBED8 [Vega]
ICGC DataPortalENSG00000221886
TCGA cBioPortalZBED8
AceView (NCBI)ZBED8
Genatlas (Paris)ZBED8
WikiGenes63920
SOURCE (Princeton)ZBED8
Genetics Home Reference (NIH)ZBED8
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED8  -     chr5:160393148-160400097 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED8  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblZBED8 - 5q33.3 [CytoView hg19]  ZBED8 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIZBED8 [Mapview hg19]  ZBED8 [Mapview hg38]
OMIM615253   
Gene and transcription
Genbank (Entrez)AA728782 AK026754 BC032603 BC112128 BC112130
RefSeq transcript (Entrez)NM_001303251 NM_022090
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBED8
Cluster EST : UnigeneHs.529464 [ NCBI ]
CGAP (NCI)Hs.529464
Alternative Splicing GalleryENSG00000221886
Gene ExpressionZBED8 [ NCBI-GEO ]   ZBED8 [ EBI - ARRAY_EXPRESS ]   ZBED8 [ SEEK ]   ZBED8 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63920
GTEX Portal (Tissue expression)ZBED8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ13
Splice isoforms : SwissVarQ8IZ13
PhosPhoSitePlusQ8IZ13
Domains : Interpro (EBI)RNaseH-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZBED8
DMDM Disease mutations63920
Blocks (Seattle)ZBED8
SuperfamilyQ8IZ13
Human Protein AtlasENSG00000221886
Peptide AtlasQ8IZ13
HPRD17430
IPIIPI00217843   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ13
IntAct (EBI)Q8IZ13
FunCoupENSG00000221886
BioGRIDZBED8
STRING (EMBL)ZBED8
ZODIACZBED8
Ontologies - Pathways
QuickGOQ8IZ13
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  
NDEx NetworkZBED8
Atlas of Cancer Signalling NetworkZBED8
Wikipedia pathwaysZBED8
Orthology - Evolution
OrthoDB63920
GeneTree (enSembl)ENSG00000221886
Phylogenetic Trees/Animal Genes : TreeFamZBED8
HOVERGENQ8IZ13
HOGENOMQ8IZ13
Homologs : HomoloGeneZBED8
Homology/Alignments : Family Browser (UCSC)ZBED8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED8
dbVarZBED8
ClinVarZBED8
1000_GenomesZBED8 
Exome Variant ServerZBED8
ExAC (Exome Aggregation Consortium)ZBED8 (select the gene name)
Genetic variants : HAPMAP63920
Genomic Variants (DGV)ZBED8 [DGVbeta]
DECIPHERZBED8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED8 
Mutations
ICGC Data PortalZBED8 
TCGA Data PortalZBED8 
Broad Tumor PortalZBED8
OASIS PortalZBED8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZBED8
BioMutasearch ZBED8
DgiDB (Drug Gene Interaction Database)ZBED8
DoCM (Curated mutations)ZBED8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED8 (select a term)
intoGenZBED8
Cancer3DZBED8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615253   
Orphanet
MedgenZBED8
Genetic Testing Registry ZBED8
NextProtQ8IZ13 [Medical]
TSGene63920
GENETestsZBED8
Target ValidationZBED8
Huge Navigator ZBED8 [HugePedia]
snp3D : Map Gene to Disease63920
BioCentury BCIQZBED8
ClinGenZBED8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63920
Chemical/Pharm GKB GenePA164717348
Clinical trialZBED8
Miscellaneous
canSAR (ICR)ZBED8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED8
EVEXZBED8
GoPubMedZBED8
iHOPZBED8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:23 CEST 2017

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