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ZBED9 (zinc finger BED-type containing 9)

Identity

Other aliasBuster4
SCAND3
ZFP38-L
ZNF305P2
ZNF452
dJ1186N24.3
HGNC (Hugo) ZBED9
LocusID (NCBI) 114821
Atlas_Id 57508
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28571630 and ends at 28587335 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBED9   13851
Cards
Entrez_Gene (NCBI)ZBED9  114821  zinc finger BED-type containing 9
AliasesBuster4; SCAND3; ZFP38-L; ZNF305P2; 
ZNF452; dJ1186N24.3
GeneCards (Weizmann)ZBED9
Ensembl hg19 (Hinxton)ENSG00000232040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232040 [Gene_View]  ENSG00000232040 [Sequence]  chr6:28571630-28587335 [Contig_View]  ZBED9 [Vega]
ICGC DataPortalENSG00000232040
TCGA cBioPortalZBED9
AceView (NCBI)ZBED9
Genatlas (Paris)ZBED9
WikiGenes114821
SOURCE (Princeton)ZBED9
Genetics Home Reference (NIH)ZBED9
Genomic and cartography
GoldenPath hg38 (UCSC)ZBED9  -     chr6:28571630-28587335 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBED9  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZBED9 - 6p22.1 [CytoView hg19]  ZBED9 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZBED9 [Mapview hg19]  ZBED9 [Mapview hg38]
OMIM615254   
Gene and transcription
Genbank (Entrez)AB067512 AK056369 AL713690 AL832486 AY517631
RefSeq transcript (Entrez)NM_001329616 NM_052923
RefSeq genomic (Entrez)NC_000006 NT_113891
Consensus coding sequences : CCDS (NCBI)ZBED9
Cluster EST : UnigeneHs.176980 [ NCBI ]
CGAP (NCI)Hs.176980
Alternative Splicing GalleryENSG00000232040
Gene ExpressionZBED9 [ NCBI-GEO ]   ZBED9 [ EBI - ARRAY_EXPRESS ]   ZBED9 [ SEEK ]   ZBED9 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBED9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114821
GTEX Portal (Tissue expression)ZBED9
Human Protein AtlasENSG00000232040-ZBED9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6R2W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6R2W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6R2W3
Splice isoforms : SwissVarQ6R2W3
PhosPhoSitePlusQ6R2W3
Domaine pattern : Prosite (Expaxy)INTEGRASE (PS50994)    SCAN_BOX (PS50804)   
Domains : Interpro (EBI)Integrase_cat-core    RNaseH-like_sf    RNaseH_sf    SCAN_dom    SCAN_sf   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  
Conserved Domain (NCBI)ZBED9
DMDM Disease mutations114821
Blocks (Seattle)ZBED9
SuperfamilyQ6R2W3
Human Protein Atlas [tissue]ENSG00000232040-ZBED9 [tissue]
Peptide AtlasQ6R2W3
IPIIPI00646555   IPI00787876   
Protein Interaction databases
DIP (DOE-UCLA)Q6R2W3
IntAct (EBI)Q6R2W3
FunCoupENSG00000232040
BioGRIDZBED9
STRING (EMBL)ZBED9
ZODIACZBED9
Ontologies - Pathways
QuickGOQ6R2W3
Ontology : AmiGOnucleic acid binding  DNA-binding transcription factor activity  regulation of transcription, DNA-templated  DNA integration  
Ontology : EGO-EBInucleic acid binding  DNA-binding transcription factor activity  regulation of transcription, DNA-templated  DNA integration  
NDEx NetworkZBED9
Atlas of Cancer Signalling NetworkZBED9
Wikipedia pathwaysZBED9
Orthology - Evolution
OrthoDB114821
GeneTree (enSembl)ENSG00000232040
Phylogenetic Trees/Animal Genes : TreeFamZBED9
HOVERGENQ6R2W3
HOGENOMQ6R2W3
Homologs : HomoloGeneZBED9
Homology/Alignments : Family Browser (UCSC)ZBED9
Gene fusions - Rearrangements
Fusion : QuiverZBED9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBED9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBED9
dbVarZBED9
ClinVarZBED9
1000_GenomesZBED9 
Exome Variant ServerZBED9
ExAC (Exome Aggregation Consortium)ENSG00000232040
GNOMAD BrowserENSG00000232040
Varsome BrowserZBED9
Genetic variants : HAPMAP114821
Genomic Variants (DGV)ZBED9 [DGVbeta]
DECIPHERZBED9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBED9 
Mutations
ICGC Data PortalZBED9 
TCGA Data PortalZBED9 
Broad Tumor PortalZBED9
OASIS PortalZBED9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZBED9
BioMutasearch ZBED9
DgiDB (Drug Gene Interaction Database)ZBED9
DoCM (Curated mutations)ZBED9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBED9 (select a term)
intoGenZBED9
Cancer3DZBED9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615254   
Orphanet
DisGeNETZBED9
MedgenZBED9
Genetic Testing Registry ZBED9
NextProtQ6R2W3 [Medical]
TSGene114821
GENETestsZBED9
Target ValidationZBED9
Huge Navigator ZBED9 [HugePedia]
snp3D : Map Gene to Disease114821
BioCentury BCIQZBED9
ClinGenZBED9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114821
Chemical/Pharm GKB GenePA162402460
Clinical trialZBED9
Miscellaneous
canSAR (ICR)ZBED9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBED9
EVEXZBED9
GoPubMedZBED9
iHOPZBED9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:50:39 CET 2018

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