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ZBTB10 (zinc finger and BTB domain containing 10)

Identity

Alias_symbol (synonym)RINZF
FLJ12752
Other alias
HGNC (Hugo) ZBTB10
LocusID (NCBI) 65986
Atlas_Id 53802
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 80486213 and ends at 80526265 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ERBIN (5q12.3) / ZBTB10 (8q21.13)ERBB2IP 5q12.3 / ZBTB10 8q21.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB10   30953
Cards
Entrez_Gene (NCBI)ZBTB10  65986  zinc finger and BTB domain containing 10
AliasesRINZF
GeneCards (Weizmann)ZBTB10
Ensembl hg19 (Hinxton)ENSG00000205189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205189 [Gene_View]  chr8:80486213-80526265 [Contig_View]  ZBTB10 [Vega]
ICGC DataPortalENSG00000205189
TCGA cBioPortalZBTB10
AceView (NCBI)ZBTB10
Genatlas (Paris)ZBTB10
WikiGenes65986
SOURCE (Princeton)ZBTB10
Genetics Home Reference (NIH)ZBTB10
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB10  -     chr8:80486213-80526265 +  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB10  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblZBTB10 - 8q21.13 [CytoView hg19]  ZBTB10 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBIZBTB10 [Mapview hg19]  ZBTB10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI627858 AJ319673 AK022814 AK056913 BC050061
RefSeq transcript (Entrez)NM_001105539 NM_001277145 NM_023929
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB10
Cluster EST : UnigeneHs.591868 [ NCBI ]
CGAP (NCI)Hs.591868
Alternative Splicing GalleryENSG00000205189
Gene ExpressionZBTB10 [ NCBI-GEO ]   ZBTB10 [ EBI - ARRAY_EXPRESS ]   ZBTB10 [ SEEK ]   ZBTB10 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65986
GTEX Portal (Tissue expression)ZBTB10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DT7
Splice isoforms : SwissVarQ96DT7
PhosPhoSitePlusQ96DT7
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB10
DMDM Disease mutations65986
Blocks (Seattle)ZBTB10
SuperfamilyQ96DT7
Human Protein AtlasENSG00000205189
Peptide AtlasQ96DT7
HPRD15689
IPIIPI00383132   IPI00410712   IPI00973578   IPI00973561   IPI00978498   
Protein Interaction databases
DIP (DOE-UCLA)Q96DT7
IntAct (EBI)Q96DT7
FunCoupENSG00000205189
BioGRIDZBTB10
STRING (EMBL)ZBTB10
ZODIACZBTB10
Ontologies - Pathways
QuickGOQ96DT7
Ontology : AmiGODNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB10
Atlas of Cancer Signalling NetworkZBTB10
Wikipedia pathwaysZBTB10
Orthology - Evolution
OrthoDB65986
GeneTree (enSembl)ENSG00000205189
Phylogenetic Trees/Animal Genes : TreeFamZBTB10
HOVERGENQ96DT7
HOGENOMQ96DT7
Homologs : HomoloGeneZBTB10
Homology/Alignments : Family Browser (UCSC)ZBTB10
Gene fusions - Rearrangements
Fusion : MitelmanERBB2IP/ZBTB10 [5q12.3/8q21.13]  [t(5;8)(q12;q21)]  
Fusion: TCGAERBB2IP 5q12.3 ZBTB10 8q21.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB10
dbVarZBTB10
ClinVarZBTB10
1000_GenomesZBTB10 
Exome Variant ServerZBTB10
ExAC (Exome Aggregation Consortium)ZBTB10 (select the gene name)
Genetic variants : HAPMAP65986
Genomic Variants (DGV)ZBTB10 [DGVbeta]
DECIPHERZBTB10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB10 
Mutations
ICGC Data PortalZBTB10 
TCGA Data PortalZBTB10 
Broad Tumor PortalZBTB10
OASIS PortalZBTB10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB10
DgiDB (Drug Gene Interaction Database)ZBTB10
DoCM (Curated mutations)ZBTB10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB10 (select a term)
intoGenZBTB10
Cancer3DZBTB10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZBTB10
Genetic Testing Registry ZBTB10
NextProtQ96DT7 [Medical]
TSGene65986
GENETestsZBTB10
Target ValidationZBTB10
Huge Navigator ZBTB10 [HugePedia]
snp3D : Map Gene to Disease65986
BioCentury BCIQZBTB10
ClinGenZBTB10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65986
Chemical/Pharm GKB GenePA134883318
Clinical trialZBTB10
Miscellaneous
canSAR (ICR)ZBTB10 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB10
EVEXZBTB10
GoPubMedZBTB10
iHOPZBTB10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:10 CEST 2017

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