Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZBTB12 (zinc finger and BTB domain containing 12)

Identity

Alias_namesC6orf46
chromosome 6 open reading frame 46
Alias_symbol (synonym)G10
NG35
D6S59E
Other aliasBat9
HGNC (Hugo) ZBTB12
LocusID (NCBI) 221527
Atlas_Id 53531
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31899617 and ends at 31901992 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB12   19066
Cards
Entrez_Gene (NCBI)ZBTB12  221527  zinc finger and BTB domain containing 12
AliasesBat9; C6orf46; D6S59E; G10; 
NG35
GeneCards (Weizmann)ZBTB12
Ensembl hg19 (Hinxton)ENSG00000204366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204366 [Gene_View]  chr6:31899617-31901992 [Contig_View]  ZBTB12 [Vega]
ICGC DataPortalENSG00000204366
TCGA cBioPortalZBTB12
AceView (NCBI)ZBTB12
Genatlas (Paris)ZBTB12
WikiGenes221527
SOURCE (Princeton)ZBTB12
Genetics Home Reference (NIH)ZBTB12
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB12  -     chr6:31899617-31901992 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB12  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblZBTB12 - 6p21.33 [CytoView hg19]  ZBTB12 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIZBTB12 [Mapview hg19]  ZBTB12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043609
RefSeq transcript (Entrez)NM_181842
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)ZBTB12
Cluster EST : UnigeneHs.234027 [ NCBI ]
CGAP (NCI)Hs.234027
Alternative Splicing GalleryENSG00000204366
Gene ExpressionZBTB12 [ NCBI-GEO ]   ZBTB12 [ EBI - ARRAY_EXPRESS ]   ZBTB12 [ SEEK ]   ZBTB12 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221527
GTEX Portal (Tissue expression)ZBTB12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y330   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y330  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y330
Splice isoforms : SwissVarQ9Y330
PhosPhoSitePlusQ9Y330
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB12
DMDM Disease mutations221527
Blocks (Seattle)ZBTB12
SuperfamilyQ9Y330
Human Protein AtlasENSG00000204366
Peptide AtlasQ9Y330
HPRD15691
IPIIPI00032455   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y330
IntAct (EBI)Q9Y330
FunCoupENSG00000204366
BioGRIDZBTB12
STRING (EMBL)ZBTB12
ZODIACZBTB12
Ontologies - Pathways
QuickGOQ9Y330
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB12
Atlas of Cancer Signalling NetworkZBTB12
Wikipedia pathwaysZBTB12
Orthology - Evolution
OrthoDB221527
GeneTree (enSembl)ENSG00000204366
Phylogenetic Trees/Animal Genes : TreeFamZBTB12
HOVERGENQ9Y330
HOGENOMQ9Y330
Homologs : HomoloGeneZBTB12
Homology/Alignments : Family Browser (UCSC)ZBTB12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB12
dbVarZBTB12
ClinVarZBTB12
1000_GenomesZBTB12 
Exome Variant ServerZBTB12
ExAC (Exome Aggregation Consortium)ZBTB12 (select the gene name)
Genetic variants : HAPMAP221527
Genomic Variants (DGV)ZBTB12 [DGVbeta]
DECIPHERZBTB12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB12 
Mutations
ICGC Data PortalZBTB12 
TCGA Data PortalZBTB12 
Broad Tumor PortalZBTB12
OASIS PortalZBTB12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB12
DgiDB (Drug Gene Interaction Database)ZBTB12
DoCM (Curated mutations)ZBTB12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB12 (select a term)
intoGenZBTB12
Cancer3DZBTB12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZBTB12
Genetic Testing Registry ZBTB12
NextProtQ9Y330 [Medical]
TSGene221527
GENETestsZBTB12
Huge Navigator ZBTB12 [HugePedia]
snp3D : Map Gene to Disease221527
BioCentury BCIQZBTB12
ClinGenZBTB12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221527
Chemical/Pharm GKB GenePA38784
Clinical trialZBTB12
Miscellaneous
canSAR (ICR)ZBTB12 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB12
EVEXZBTB12
GoPubMedZBTB12
iHOPZBTB12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:32 CEST 2017

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