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ZBTB20 (zinc finger and BTB domain containing 20)

Identity

Alias (NCBI)DPZF
HOF
ODA-8S
PRIMS
ZNF288
HGNC (Hugo) ZBTB20
HGNC Alias symbODA-8S
DKFZp566F123
DPZF
HGNC Previous nameZNF288
HGNC Previous namezinc finger protein 288
LocusID (NCBI) 26137
Atlas_Id 42877
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 114314516 and ends at 115147288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LAPTM5 (1p35.2) / ZBTB20 (3q13.31)MAP7 (6q23.3) / ZBTB20 (3q13.31)MYO7A (11q13.5) / ZBTB20 (3q13.31)
ZBTB20 (3q13.31) / C3orf14 (3p14.2)ZBTB20 (3q13.31) / CD200R1 (3q13.2)ZBTB20 (3q13.31) / CD96 (3q13.13)
ZBTB20 (3q13.31) / CMSS1 (3q12.1)ZBTB20 (3q13.31) / EPHA6 (3q11.2)ZBTB20 (3q13.31) / FBXO11 (2p16.3)
ZBTB20 (3q13.31) / GNAS (20q13.32)ZBTB20 (3q13.31) / LSAMP (3q13.31)ZBTB20 (3q13.31) / LUC7L2 (7q34)
ZBTB20 (3q13.31) / NAMPT (7q22.3)MAP7 6q23.3 / ZBTB20 3q13.31ZBTB20 3q13.31 / C3orf14 3p14.2
ZBTB20 3q13.31 C3orf26ZBTB20 3q13.31 / CD200R1 3q13.2ZBTB20 3q13.31 / CD96 3q13.13
ZBTB20 3q13.31 / EPHA6 3q11.2ZBTB20 3q13.31 / LSAMP 3q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZBTB20   13503
Cards
Entrez_Gene (NCBI)ZBTB20    zinc finger and BTB domain containing 20
AliasesDPZF; HOF; ODA-8S; PRIMS; 
ZNF288
GeneCards (Weizmann)ZBTB20
Ensembl hg19 (Hinxton)ENSG00000181722 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181722 [Gene_View]  ENSG00000181722 [Sequence]  chr3:114314516-115147288 [Contig_View]  ZBTB20 [Vega]
ICGC DataPortalENSG00000181722
TCGA cBioPortalZBTB20
AceView (NCBI)ZBTB20
Genatlas (Paris)ZBTB20
SOURCE (Princeton)ZBTB20
Genetics Home Reference (NIH)ZBTB20
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB20  -     chr3:114314516-115147288 -  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB20  -     3q13.31   [Description]    (hg19-Feb_2009)
GoldenPathZBTB20 - 3q13.31 [CytoView hg19]  ZBTB20 - 3q13.31 [CytoView hg38]
ImmunoBaseENSG00000181722
Genome Data Viewer NCBIZBTB20 [Mapview hg19]  
OMIM259050   606025   
Gene and transcription
Genbank (Entrez)AF139460 AK001020 AK022228 AK023302 AK091904
RefSeq transcript (Entrez)NM_001164342 NM_001164343 NM_001164344 NM_001164345 NM_001164346 NM_001164347 NM_001348800 NM_001348801 NM_001348802 NM_001348803 NM_001348804 NM_001348805 NM_001393393 NM_001393394 NM_001393395 NM_001393396 NM_015642
Consensus coding sequences : CCDS (NCBI)ZBTB20
Gene ExpressionZBTB20 [ NCBI-GEO ]   ZBTB20 [ EBI - ARRAY_EXPRESS ]   ZBTB20 [ SEEK ]   ZBTB20 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB20 [ Firebrowse - Broad ]
GenevisibleExpression of ZBTB20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26137
GTEX Portal (Tissue expression)ZBTB20
Human Protein AtlasENSG00000181722-ZBTB20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC78
PhosPhoSitePlusQ9HC78
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB20
SuperfamilyQ9HC78
AlphaFold pdb e-kbQ9HC78   
Human Protein Atlas [tissue]ENSG00000181722-ZBTB20 [tissue]
HPRD05822
Protein Interaction databases
DIP (DOE-UCLA)Q9HC78
IntAct (EBI)Q9HC78
BioGRIDZBTB20
STRING (EMBL)ZBTB20
ZODIACZBTB20
Ontologies - Pathways
QuickGOQ9HC78
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  transcription cis-regulatory region binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  nucleus  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription by RNA polymerase II  nuclear body  positive regulation of glycolytic process  metal ion binding  positive regulation of lipid biosynthetic process  lipid homeostasis  cellular response to glucose stimulus  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  transcription cis-regulatory region binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  nucleus  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription by RNA polymerase II  nuclear body  positive regulation of glycolytic process  metal ion binding  positive regulation of lipid biosynthetic process  lipid homeostasis  cellular response to glucose stimulus  sequence-specific double-stranded DNA binding  
NDEx NetworkZBTB20
Atlas of Cancer Signalling NetworkZBTB20
Wikipedia pathwaysZBTB20
Orthology - Evolution
OrthoDB26137
GeneTree (enSembl)ENSG00000181722
Phylogenetic Trees/Animal Genes : TreeFamZBTB20
Homologs : HomoloGeneZBTB20
Homology/Alignments : Family Browser (UCSC)ZBTB20
Gene fusions - Rearrangements
Fusion : MitelmanMAP7/ZBTB20 [6q23.3/3q13.31]  
Fusion : MitelmanMYO7A/ZBTB20 [11q13.5/3q13.31]  
Fusion : MitelmanZBTB20/C3orf14 [3q13.31/3p14.2]  
Fusion : MitelmanZBTB20/CD200R1 [3q13.31/3q13.2]  
Fusion : MitelmanZBTB20/CD96 [3q13.31/3q13.13]  
Fusion : MitelmanZBTB20/CMSS1 [3q13.31/3q12.1]  
Fusion : MitelmanZBTB20/EPHA6 [3q13.31/3q11.2]  
Fusion : MitelmanZBTB20/LSAMP [3q13.31/3q13.31]  
Fusion : QuiverZBTB20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB20
dbVarZBTB20
ClinVarZBTB20
MonarchZBTB20
1000_GenomesZBTB20 
Exome Variant ServerZBTB20
GNOMAD BrowserENSG00000181722
Varsome BrowserZBTB20
ACMGZBTB20 variants
VarityQ9HC78
Genomic Variants (DGV)ZBTB20 [DGVbeta]
DECIPHERZBTB20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB20 
Mutations
ICGC Data PortalZBTB20 
TCGA Data PortalZBTB20 
Broad Tumor PortalZBTB20
OASIS PortalZBTB20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZBTB20
Mutations and Diseases : HGMDZBTB20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZBTB20
DgiDB (Drug Gene Interaction Database)ZBTB20
DoCM (Curated mutations)ZBTB20
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB20
Cancer3DZBTB20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM259050    606025   
Orphanet2735   
DisGeNETZBTB20
MedgenZBTB20
Genetic Testing Registry ZBTB20
NextProtQ9HC78 [Medical]
GENETestsZBTB20
Target ValidationZBTB20
Huge Navigator ZBTB20 [HugePedia]
ClinGenZBTB20
Clinical trials, drugs, therapy
MyCancerGenomeZBTB20
Protein Interactions : CTDZBTB20
Pharm GKB GenePA37789
PharosQ9HC78
Clinical trialZBTB20
Miscellaneous
canSAR (ICR)ZBTB20
HarmonizomeZBTB20
DataMed IndexZBTB20
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZBTB20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:46 CEST 2021

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