Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZBTB20 (zinc finger and BTB domain containing 20)

Identity

Alias_namesZNF288
zinc finger protein 288
Alias_symbol (synonym)ODA-8S
DKFZp566F123
DPZF
Other aliasHOF
PRIMS
HGNC (Hugo) ZBTB20
LocusID (NCBI) 26137
Atlas_Id 42877
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 114033347 and ends at 114102489 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LAPTM5 (1p35.2) / ZBTB20 (3q13.31)MAP7 (6q23.3) / ZBTB20 (3q13.31)MYO7A (11q13.5) / ZBTB20 (3q13.31)
ZBTB20 (3q13.31) / C3orf14 (3p14.2)ZBTB20 (3q13.31) / CD200R1 (3q13.2)ZBTB20 (3q13.31) / CD96 (3q13.13)
ZBTB20 (3q13.31) / CMSS1 (3q12.1)ZBTB20 (3q13.31) / EPHA6 (3q11.2)ZBTB20 (3q13.31) / FBXO11 (2p16.3)
ZBTB20 (3q13.31) / GNAS (20q13.32)ZBTB20 (3q13.31) / LSAMP (3q13.31)ZBTB20 (3q13.31) / LUC7L2 (7q34)
ZBTB20 (3q13.31) / NAMPT (7q22.3)MAP7 6q23.3 / ZBTB20 3q13.31ZBTB20 3q13.31 / C3orf14 3p14.2
ZBTB20 3q13.31 C3orf26ZBTB20 3q13.31 / CD200R1 3q13.2ZBTB20 3q13.31 / CD96 3q13.13
ZBTB20 3q13.31 / EPHA6 3q11.2ZBTB20 3q13.31 / LSAMP 3q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB20   13503
Cards
Entrez_Gene (NCBI)ZBTB20  26137  zinc finger and BTB domain containing 20
AliasesDPZF; HOF; ODA-8S; PRIMS; 
ZNF288
GeneCards (Weizmann)ZBTB20
Ensembl hg19 (Hinxton)ENSG00000181722 [Gene_View]  chr3:114033347-114102489 [Contig_View]  ZBTB20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181722 [Gene_View]  chr3:114033347-114102489 [Contig_View]  ZBTB20 [Vega]
ICGC DataPortalENSG00000181722
TCGA cBioPortalZBTB20
AceView (NCBI)ZBTB20
Genatlas (Paris)ZBTB20
WikiGenes26137
SOURCE (Princeton)ZBTB20
Genetics Home Reference (NIH)ZBTB20
Genomic and cartography
GoldenPath hg19 (UCSC)ZBTB20  -     chr3:114033347-114102489 -  3q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZBTB20  -     3q13.31   [Description]    (hg38-Dec_2013)
EnsemblZBTB20 - 3q13.31 [CytoView hg19]  ZBTB20 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBIZBTB20 [Mapview hg19]  ZBTB20 [Mapview hg38]
OMIM259050   606025   
Gene and transcription
Genbank (Entrez)AF139460 AK001020 AK022228 AK023302 AK091904
RefSeq transcript (Entrez)NM_001164342 NM_001164343 NM_001164344 NM_001164345 NM_001164346 NM_001164347 NM_015642
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ZBTB20
Cluster EST : UnigeneHs.744879 [ NCBI ]
CGAP (NCI)Hs.744879
Alternative Splicing GalleryENSG00000181722
Gene ExpressionZBTB20 [ NCBI-GEO ]   ZBTB20 [ EBI - ARRAY_EXPRESS ]   ZBTB20 [ SEEK ]   ZBTB20 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26137
GTEX Portal (Tissue expression)ZBTB20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC78
Splice isoforms : SwissVarQ9HC78
PhosPhoSitePlusQ9HC78
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB20
DMDM Disease mutations26137
Blocks (Seattle)ZBTB20
SuperfamilyQ9HC78
Human Protein AtlasENSG00000181722
Peptide AtlasQ9HC78
HPRD05822
IPIIPI00178894   IPI00743178   IPI00947046   IPI00946700   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC78
IntAct (EBI)Q9HC78
FunCoupENSG00000181722
BioGRIDZBTB20
STRING (EMBL)ZBTB20
ZODIACZBTB20
Ontologies - Pathways
QuickGOQ9HC78
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  nucleus  nucleoplasm  transcription, DNA-templated  positive regulation of interferon-beta production  positive regulation of interleukin-6 production  positive regulation of tumor necrosis factor production  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  nucleus  nucleoplasm  transcription, DNA-templated  positive regulation of interferon-beta production  positive regulation of interleukin-6 production  positive regulation of tumor necrosis factor production  metal ion binding  
NDEx NetworkZBTB20
Atlas of Cancer Signalling NetworkZBTB20
Wikipedia pathwaysZBTB20
Orthology - Evolution
OrthoDB26137
GeneTree (enSembl)ENSG00000181722
Phylogenetic Trees/Animal Genes : TreeFamZBTB20
HOVERGENQ9HC78
HOGENOMQ9HC78
Homologs : HomoloGeneZBTB20
Homology/Alignments : Family Browser (UCSC)ZBTB20
Gene fusions - Rearrangements
Fusion : MitelmanMAP7/ZBTB20 [6q23.3/3q13.31]  [t(3;6)(q13;q23)]  
Fusion : MitelmanMYO7A/ZBTB20 [11q13.5/3q13.31]  [t(3;11)(q13;q13)]  
Fusion : MitelmanZBTB20/C3orf14 [3q13.31/3p14.2]  [t(3;3)(p14;q13)]  
Fusion : MitelmanZBTB20/CD200R1 [3q13.31/3q13.2]  [t(3;3)(q13;q13)]  
Fusion : MitelmanZBTB20/CD96 [3q13.31/3q13.13]  [t(3;3)(q13;q13)]  
Fusion : MitelmanZBTB20/CMSS1 [3q13.31/3q12.1]  [t(3;3)(q12;q13)]  
Fusion : MitelmanZBTB20/EPHA6 [3q13.31/3q11.2]  [t(3;3)(q11;q13)]  
Fusion : MitelmanZBTB20/LSAMP [3q13.31/3q13.31]  [t(3;3)(q13;q13)]  
Fusion: TCGAMAP7 6q23.3 ZBTB20 3q13.31 KIRC
Fusion: TCGAZBTB20 3q13.31 C3orf14 3p14.2 LGG
Fusion: TCGAZBTB20 3q13.31 C3orf26 KIRC
Fusion: TCGAZBTB20 3q13.31 CD200R1 3q13.2 KIRC
Fusion: TCGAZBTB20 3q13.31 CD96 3q13.13 BRCA
Fusion: TCGAZBTB20 3q13.31 EPHA6 3q11.2 LUAD
Fusion: TCGAZBTB20 3q13.31 LSAMP 3q13.31 KIRC LGG LUAD PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB20
dbVarZBTB20
ClinVarZBTB20
1000_GenomesZBTB20 
Exome Variant ServerZBTB20
ExAC (Exome Aggregation Consortium)ZBTB20 (select the gene name)
Genetic variants : HAPMAP26137
Genomic Variants (DGV)ZBTB20 [DGVbeta]
DECIPHER (Syndromes)3:114033347-114102489  ENSG00000181722
CONAN: Copy Number AnalysisZBTB20 
Mutations
ICGC Data PortalZBTB20 
TCGA Data PortalZBTB20 
Broad Tumor PortalZBTB20
OASIS PortalZBTB20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB20
DgiDB (Drug Gene Interaction Database)ZBTB20
DoCM (Curated mutations)ZBTB20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB20 (select a term)
intoGenZBTB20
Cancer3DZBTB20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM259050    606025   
Orphanet2735   
MedgenZBTB20
Genetic Testing Registry ZBTB20
NextProtQ9HC78 [Medical]
TSGene26137
GENETestsZBTB20
Huge Navigator ZBTB20 [HugePedia]
snp3D : Map Gene to Disease26137
BioCentury BCIQZBTB20
ClinGenZBTB20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26137
Chemical/Pharm GKB GenePA37789
Clinical trialZBTB20
Miscellaneous
canSAR (ICR)ZBTB20 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB20
EVEXZBTB20
GoPubMedZBTB20
iHOPZBTB20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:37 CET 2017

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