Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZBTB21 (zinc finger and BTB domain containing 21)

Identity

Alias_namesZNF295
zinc finger protein 295
Alias_symbol (synonym)KIAA1227
Other alias
HGNC (Hugo) ZBTB21
LocusID (NCBI) 49854
Atlas_Id 75852
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41986831 and ends at 42010387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C2CD2 (21q22.3) / ZBTB21 (21q22.3)ZBTB21 (21q22.3) / PFKL (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB21   13083
Cards
Entrez_Gene (NCBI)ZBTB21  49854  zinc finger and BTB domain containing 21
AliasesZNF295
GeneCards (Weizmann)ZBTB21
Ensembl hg19 (Hinxton)ENSG00000173276 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173276 [Gene_View]  chr21:41986831-42010387 [Contig_View]  ZBTB21 [Vega]
ICGC DataPortalENSG00000173276
TCGA cBioPortalZBTB21
AceView (NCBI)ZBTB21
Genatlas (Paris)ZBTB21
WikiGenes49854
SOURCE (Princeton)ZBTB21
Genetics Home Reference (NIH)ZBTB21
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB21  -     chr21:41986831-42010387 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB21  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblZBTB21 - 21q22.3 [CytoView hg19]  ZBTB21 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIZBTB21 [Mapview hg19]  ZBTB21 [Mapview hg38]
OMIM616485   
Gene and transcription
Genbank (Entrez)AB033053 AB041014 AB041015 AB190372 AB190373
RefSeq transcript (Entrez)NM_001098402 NM_001098403 NM_001320729 NM_001320731 NM_020727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB21
Cluster EST : UnigeneHs.618406 [ NCBI ]
CGAP (NCI)Hs.618406
Alternative Splicing GalleryENSG00000173276
Gene ExpressionZBTB21 [ NCBI-GEO ]   ZBTB21 [ EBI - ARRAY_EXPRESS ]   ZBTB21 [ SEEK ]   ZBTB21 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)49854
GTEX Portal (Tissue expression)ZBTB21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULJ3
Splice isoforms : SwissVarQ9ULJ3
PhosPhoSitePlusQ9ULJ3
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB21
DMDM Disease mutations49854
Blocks (Seattle)ZBTB21
PDB (SRS)1WJP   
PDB (PDBSum)1WJP   
PDB (IMB)1WJP   
PDB (RSDB)1WJP   
Structural Biology KnowledgeBase1WJP   
SCOP (Structural Classification of Proteins)1WJP   
CATH (Classification of proteins structures)1WJP   
SuperfamilyQ9ULJ3
Human Protein AtlasENSG00000173276
Peptide AtlasQ9ULJ3
HPRD10328
IPIIPI00008137   IPI00797660   IPI00789661   IPI00790156   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULJ3
IntAct (EBI)Q9ULJ3
FunCoupENSG00000173276
BioGRIDZBTB21
STRING (EMBL)ZBTB21
ZODIACZBTB21
Ontologies - Pathways
QuickGOQ9ULJ3
Ontology : AmiGOnucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  methyl-CpG binding  metal ion binding  
Ontology : EGO-EBInucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  methyl-CpG binding  metal ion binding  
NDEx NetworkZBTB21
Atlas of Cancer Signalling NetworkZBTB21
Wikipedia pathwaysZBTB21
Orthology - Evolution
OrthoDB49854
GeneTree (enSembl)ENSG00000173276
Phylogenetic Trees/Animal Genes : TreeFamZBTB21
HOVERGENQ9ULJ3
HOGENOMQ9ULJ3
Homologs : HomoloGeneZBTB21
Homology/Alignments : Family Browser (UCSC)ZBTB21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB21
dbVarZBTB21
ClinVarZBTB21
1000_GenomesZBTB21 
Exome Variant ServerZBTB21
ExAC (Exome Aggregation Consortium)ZBTB21 (select the gene name)
Genetic variants : HAPMAP49854
Genomic Variants (DGV)ZBTB21 [DGVbeta]
DECIPHERZBTB21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB21 
Mutations
ICGC Data PortalZBTB21 
TCGA Data PortalZBTB21 
Broad Tumor PortalZBTB21
OASIS PortalZBTB21 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZBTB21
BioMutasearch ZBTB21
DgiDB (Drug Gene Interaction Database)ZBTB21
DoCM (Curated mutations)ZBTB21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB21 (select a term)
intoGenZBTB21
Cancer3DZBTB21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616485   
Orphanet
MedgenZBTB21
Genetic Testing Registry ZBTB21
NextProtQ9ULJ3 [Medical]
TSGene49854
GENETestsZBTB21
Target ValidationZBTB21
Huge Navigator ZBTB21 [HugePedia]
snp3D : Map Gene to Disease49854
BioCentury BCIQZBTB21
ClinGenZBTB21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD49854
Chemical/Pharm GKB GenePA37659
Clinical trialZBTB21
Miscellaneous
canSAR (ICR)ZBTB21 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB21
EVEXZBTB21
GoPubMedZBTB21
iHOPZBTB21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.