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ZBTB22 (zinc finger and BTB domain containing 22)

Identity

Alias_namesZNF297
zinc finger protein 297
Alias_symbol (synonym)BING1
ZNF297A
fruitless
fru
ZBTB22A
Other alias
HGNC (Hugo) ZBTB22
LocusID (NCBI) 9278
Atlas_Id 75853
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33314405 and ends at 33317942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZBTB22 (6p21.32) / PLCG1 (20q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB22   13085
Cards
Entrez_Gene (NCBI)ZBTB22  9278  zinc finger and BTB domain containing 22
AliasesBING1; ZBTB22A; ZNF297; ZNF297A; 
fru; fruitless
GeneCards (Weizmann)ZBTB22
Ensembl hg19 (Hinxton)ENSG00000236104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236104 [Gene_View]  ENSG00000236104 [Sequence]  chr6:33314405-33317942 [Contig_View]  ZBTB22 [Vega]
ICGC DataPortalENSG00000236104
TCGA cBioPortalZBTB22
AceView (NCBI)ZBTB22
Genatlas (Paris)ZBTB22
WikiGenes9278
SOURCE (Princeton)ZBTB22
Genetics Home Reference (NIH)ZBTB22
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB22  -     chr6:33314405-33317942 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB22  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblZBTB22 - 6p21.32 [CytoView hg19]  ZBTB22 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIZBTB22 [Mapview hg19]  ZBTB22 [Mapview hg38]
OMIM611439   
Gene and transcription
Genbank (Entrez)AK095978 AK315747 BC018541 BQ002626 BX459194
RefSeq transcript (Entrez)NM_001145338 NM_005453
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_009876 NT_113891 NT_167245 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)ZBTB22
Cluster EST : UnigeneHs.206770 [ NCBI ]
CGAP (NCI)Hs.206770
Alternative Splicing GalleryENSG00000236104
Gene ExpressionZBTB22 [ NCBI-GEO ]   ZBTB22 [ EBI - ARRAY_EXPRESS ]   ZBTB22 [ SEEK ]   ZBTB22 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9278
GTEX Portal (Tissue expression)ZBTB22
Human Protein AtlasENSG00000236104-ZBTB22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15209   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15209  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15209
Splice isoforms : SwissVarO15209
PhosPhoSitePlusO15209
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    ZBT22    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB22
DMDM Disease mutations9278
Blocks (Seattle)ZBTB22
SuperfamilyO15209
Human Protein Atlas [tissue]ENSG00000236104-ZBTB22 [tissue]
Peptide AtlasO15209
HPRD15761
IPIIPI00289476   IPI00642147   IPI00795614   
Protein Interaction databases
DIP (DOE-UCLA)O15209
IntAct (EBI)O15209
FunCoupENSG00000236104
BioGRIDZBTB22
STRING (EMBL)ZBTB22
ZODIACZBTB22
Ontologies - Pathways
QuickGOO15209
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB22
Atlas of Cancer Signalling NetworkZBTB22
Wikipedia pathwaysZBTB22
Orthology - Evolution
OrthoDB9278
GeneTree (enSembl)ENSG00000236104
Phylogenetic Trees/Animal Genes : TreeFamZBTB22
HOVERGENO15209
HOGENOMO15209
Homologs : HomoloGeneZBTB22
Homology/Alignments : Family Browser (UCSC)ZBTB22
Gene fusions - Rearrangements
Fusion : QuiverZBTB22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB22
dbVarZBTB22
ClinVarZBTB22
1000_GenomesZBTB22 
Exome Variant ServerZBTB22
ExAC (Exome Aggregation Consortium)ENSG00000236104
GNOMAD BrowserENSG00000236104
Varsome BrowserZBTB22
Genetic variants : HAPMAP9278
Genomic Variants (DGV)ZBTB22 [DGVbeta]
DECIPHERZBTB22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB22 
Mutations
ICGC Data PortalZBTB22 
TCGA Data PortalZBTB22 
Broad Tumor PortalZBTB22
OASIS PortalZBTB22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB22
DgiDB (Drug Gene Interaction Database)ZBTB22
DoCM (Curated mutations)ZBTB22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB22 (select a term)
intoGenZBTB22
Cancer3DZBTB22(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611439   
Orphanet
DisGeNETZBTB22
MedgenZBTB22
Genetic Testing Registry ZBTB22
NextProtO15209 [Medical]
TSGene9278
GENETestsZBTB22
Target ValidationZBTB22
Huge Navigator ZBTB22 [HugePedia]
snp3D : Map Gene to Disease9278
BioCentury BCIQZBTB22
ClinGenZBTB22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9278
Chemical/Pharm GKB GenePA37661
Clinical trialZBTB22
Miscellaneous
canSAR (ICR)ZBTB22 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB22
EVEXZBTB22
GoPubMedZBTB22
iHOPZBTB22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:38:49 CEST 2018

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