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ZBTB3 (zinc finger and BTB domain containing 3)

Identity

Alias_symbol (synonym)FLJ23392
Other alias-
HGNC (Hugo) ZBTB3
LocusID (NCBI) 79842
Atlas_Id 75857
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62750963 and ends at 62754184 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB3   22918
Cards
Entrez_Gene (NCBI)ZBTB3  79842  zinc finger and BTB domain containing 3
Aliases
GeneCards (Weizmann)ZBTB3
Ensembl hg19 (Hinxton)ENSG00000185670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185670 [Gene_View]  chr11:62750963-62754184 [Contig_View]  ZBTB3 [Vega]
ICGC DataPortalENSG00000185670
TCGA cBioPortalZBTB3
AceView (NCBI)ZBTB3
Genatlas (Paris)ZBTB3
WikiGenes79842
SOURCE (Princeton)ZBTB3
Genetics Home Reference (NIH)ZBTB3
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB3  -     chr11:62750963-62754184 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB3  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblZBTB3 - 11q12.3 [CytoView hg19]  ZBTB3 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBIZBTB3 [Mapview hg19]  ZBTB3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027045 BC025249 DA770074 DQ892842 EU176736
RefSeq transcript (Entrez)NM_024784
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB3
Cluster EST : UnigeneHs.147554 [ NCBI ]
CGAP (NCI)Hs.147554
Alternative Splicing GalleryENSG00000185670
Gene ExpressionZBTB3 [ NCBI-GEO ]   ZBTB3 [ EBI - ARRAY_EXPRESS ]   ZBTB3 [ SEEK ]   ZBTB3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79842
GTEX Portal (Tissue expression)ZBTB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5J0
Splice isoforms : SwissVarQ9H5J0
PhosPhoSitePlusQ9H5J0
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB3
DMDM Disease mutations79842
Blocks (Seattle)ZBTB3
SuperfamilyQ9H5J0
Human Protein AtlasENSG00000185670
Peptide AtlasQ9H5J0
HPRD15693
IPIIPI00165014   IPI00985099   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5J0
IntAct (EBI)Q9H5J0
FunCoupENSG00000185670
BioGRIDZBTB3
STRING (EMBL)ZBTB3
ZODIACZBTB3
Ontologies - Pathways
QuickGOQ9H5J0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB3
Atlas of Cancer Signalling NetworkZBTB3
Wikipedia pathwaysZBTB3
Orthology - Evolution
OrthoDB79842
GeneTree (enSembl)ENSG00000185670
Phylogenetic Trees/Animal Genes : TreeFamZBTB3
HOVERGENQ9H5J0
HOGENOMQ9H5J0
Homologs : HomoloGeneZBTB3
Homology/Alignments : Family Browser (UCSC)ZBTB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB3
dbVarZBTB3
ClinVarZBTB3
1000_GenomesZBTB3 
Exome Variant ServerZBTB3
ExAC (Exome Aggregation Consortium)ZBTB3 (select the gene name)
Genetic variants : HAPMAP79842
Genomic Variants (DGV)ZBTB3 [DGVbeta]
DECIPHERZBTB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB3 
Mutations
ICGC Data PortalZBTB3 
TCGA Data PortalZBTB3 
Broad Tumor PortalZBTB3
OASIS PortalZBTB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB3
DgiDB (Drug Gene Interaction Database)ZBTB3
DoCM (Curated mutations)ZBTB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB3 (select a term)
intoGenZBTB3
Cancer3DZBTB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZBTB3
Genetic Testing Registry ZBTB3
NextProtQ9H5J0 [Medical]
TSGene79842
GENETestsZBTB3
Target ValidationZBTB3
Huge Navigator ZBTB3 [HugePedia]
snp3D : Map Gene to Disease79842
BioCentury BCIQZBTB3
ClinGenZBTB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79842
Chemical/Pharm GKB GenePA134950004
Clinical trialZBTB3
Miscellaneous
canSAR (ICR)ZBTB3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB3
EVEXZBTB3
GoPubMedZBTB3
iHOPZBTB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:26 CEST 2017

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