Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZBTB37 (zinc finger and BTB domain containing 37)

Identity

Alias_symbol (synonym)MGC2629
ZNF908
Other aliasD430004I08Rik
HGNC (Hugo) ZBTB37
LocusID (NCBI) 84614
Atlas_Id 54789
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 173837493 and ends at 173855774 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DHX9 (1q25.3) / ZBTB37 (1q25.1)RABGAP1L (1q25.1) / ZBTB37 (1q25.1)ZBTB37 (1q25.1) / CAMTA1 (1p36.31)
DHX9 1q25.3 / ZBTB37 1q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB37   28365
Cards
Entrez_Gene (NCBI)ZBTB37  84614  zinc finger and BTB domain containing 37
AliasesD430004I08Rik; ZNF908
GeneCards (Weizmann)ZBTB37
Ensembl hg19 (Hinxton)ENSG00000185278 [Gene_View]  chr1:173837493-173855774 [Contig_View]  ZBTB37 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185278 [Gene_View]  chr1:173837493-173855774 [Contig_View]  ZBTB37 [Vega]
ICGC DataPortalENSG00000185278
TCGA cBioPortalZBTB37
AceView (NCBI)ZBTB37
Genatlas (Paris)ZBTB37
WikiGenes84614
SOURCE (Princeton)ZBTB37
Genetics Home Reference (NIH)ZBTB37
Genomic and cartography
GoldenPath hg19 (UCSC)ZBTB37  -     chr1:173837493-173855774 +  1q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZBTB37  -     1q25.1   [Description]    (hg38-Dec_2013)
EnsemblZBTB37 - 1q25.1 [CytoView hg19]  ZBTB37 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBIZBTB37 [Mapview hg19]  ZBTB37 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF318371 AK057310 AK302696 BC003116 BC006315
RefSeq transcript (Entrez)NM_001122770 NM_032522
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)ZBTB37
Cluster EST : UnigeneHs.668497 [ NCBI ]
CGAP (NCI)Hs.668497
Alternative Splicing GalleryENSG00000185278
Gene ExpressionZBTB37 [ NCBI-GEO ]   ZBTB37 [ EBI - ARRAY_EXPRESS ]   ZBTB37 [ SEEK ]   ZBTB37 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84614
GTEX Portal (Tissue expression)ZBTB37
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TC79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TC79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TC79
Splice isoforms : SwissVarQ5TC79
PhosPhoSitePlusQ5TC79
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB37
DMDM Disease mutations84614
Blocks (Seattle)ZBTB37
SuperfamilyQ5TC79
Human Protein AtlasENSG00000185278
Peptide AtlasQ5TC79
HPRD15694
IPIIPI00000141   IPI00607873   IPI00607667   IPI00747755   
Protein Interaction databases
DIP (DOE-UCLA)Q5TC79
IntAct (EBI)Q5TC79
FunCoupENSG00000185278
BioGRIDZBTB37
STRING (EMBL)ZBTB37
ZODIACZBTB37
Ontologies - Pathways
QuickGOQ5TC79
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB37
Atlas of Cancer Signalling NetworkZBTB37
Wikipedia pathwaysZBTB37
Orthology - Evolution
OrthoDB84614
GeneTree (enSembl)ENSG00000185278
Phylogenetic Trees/Animal Genes : TreeFamZBTB37
HOVERGENQ5TC79
HOGENOMQ5TC79
Homologs : HomoloGeneZBTB37
Homology/Alignments : Family Browser (UCSC)ZBTB37
Gene fusions - Rearrangements
Fusion : MitelmanDHX9/ZBTB37 [1q25.3/1q25.1]  [t(1;1)(q25;q25)]  
Fusion : MitelmanRABGAP1L/ZBTB37 [1q25.1/1q25.1]  [del(1)(q25)]  [del(1)(q25q25)]  
Fusion: TCGADHX9 1q25.3 ZBTB37 1q25.1 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB37
dbVarZBTB37
ClinVarZBTB37
1000_GenomesZBTB37 
Exome Variant ServerZBTB37
ExAC (Exome Aggregation Consortium)ZBTB37 (select the gene name)
Genetic variants : HAPMAP84614
Genomic Variants (DGV)ZBTB37 [DGVbeta]
DECIPHER (Syndromes)1:173837493-173855774  ENSG00000185278
CONAN: Copy Number AnalysisZBTB37 
Mutations
ICGC Data PortalZBTB37 
TCGA Data PortalZBTB37 
Broad Tumor PortalZBTB37
OASIS PortalZBTB37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB37
DgiDB (Drug Gene Interaction Database)ZBTB37
DoCM (Curated mutations)ZBTB37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB37 (select a term)
intoGenZBTB37
Cancer3DZBTB37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZBTB37
Genetic Testing Registry ZBTB37
NextProtQ5TC79 [Medical]
TSGene84614
GENETestsZBTB37
Huge Navigator ZBTB37 [HugePedia]
snp3D : Map Gene to Disease84614
BioCentury BCIQZBTB37
ClinGenZBTB37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84614
Chemical/Pharm GKB GenePA134911383
Clinical trialZBTB37
Miscellaneous
canSAR (ICR)ZBTB37 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB37
EVEXZBTB37
GoPubMedZBTB37
iHOPZBTB37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:38 CET 2017

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