Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZBTB38 (zinc finger and BTB domain containing 38)

Identity

Alias_symbol (synonym)FLJ35036
CIBZ
ZNF921
PPP1R171
Other alias
HGNC (Hugo) ZBTB38
LocusID (NCBI) 253461
Atlas_Id 75859
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 141324213 and ends at 141449790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRRC15 (3q29) / ZBTB38 (3q23)PTPN3 (9q31.3) / ZBTB38 (3q23)RASA2 (3q23) / ZBTB38 (3q23)
ZBTB38 (3q23) / PXYLP1 (3q23)ZBTB38 (3q23) / ZBTB38 (3q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB38   26636
Cards
Entrez_Gene (NCBI)ZBTB38  253461  zinc finger and BTB domain containing 38
AliasesCIBZ; PPP1R171; ZNF921
GeneCards (Weizmann)ZBTB38
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:141324213-141449790 [Contig_View]  ZBTB38 [Vega]
TCGA cBioPortalZBTB38
AceView (NCBI)ZBTB38
Genatlas (Paris)ZBTB38
WikiGenes253461
SOURCE (Princeton)ZBTB38
Genetics Home Reference (NIH)ZBTB38
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB38  -     chr3:141324213-141449790 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB38  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblZBTB38 - 3q23 [CytoView hg19]  ZBTB38 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIZBTB38 [Mapview hg19]  ZBTB38 [Mapview hg38]
OMIM612218   
Gene and transcription
Genbank (Entrez)AA683353 AK025985 AK055693 AK092355 AK094201
RefSeq transcript (Entrez)NM_001080412 NM_001350099 NM_001350100 NM_152535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB38
Cluster EST : UnigeneHs.518301 [ NCBI ]
CGAP (NCI)Hs.518301
Gene ExpressionZBTB38 [ NCBI-GEO ]   ZBTB38 [ EBI - ARRAY_EXPRESS ]   ZBTB38 [ SEEK ]   ZBTB38 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253461
GTEX Portal (Tissue expression)ZBTB38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAP3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAP3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAP3
Splice isoforms : SwissVarQ8NAP3
PhosPhoSitePlusQ8NAP3
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB38
DMDM Disease mutations253461
Blocks (Seattle)ZBTB38
SuperfamilyQ8NAP3
Peptide AtlasQ8NAP3
IPIIPI01010566   IPI00788750   IPI00956059   IPI00965257   IPI00967380   IPI00796027   IPI00964900   IPI00966306   IPI00967685   IPI00966861   IPI00968181   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAP3
IntAct (EBI)Q8NAP3
BioGRIDZBTB38
STRING (EMBL)ZBTB38
ZODIACZBTB38
Ontologies - Pathways
QuickGOQ8NAP3
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  chromosome  regulation of DNA replication  transcription, DNA-templated  cellular response to DNA damage stimulus  methyl-CpG binding  protein homodimerization activity  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  blood microparticle  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  chromosome  regulation of DNA replication  transcription, DNA-templated  cellular response to DNA damage stimulus  methyl-CpG binding  protein homodimerization activity  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  blood microparticle  
NDEx NetworkZBTB38
Atlas of Cancer Signalling NetworkZBTB38
Wikipedia pathwaysZBTB38
Orthology - Evolution
OrthoDB253461
Phylogenetic Trees/Animal Genes : TreeFamZBTB38
HOVERGENQ8NAP3
HOGENOMQ8NAP3
Homologs : HomoloGeneZBTB38
Homology/Alignments : Family Browser (UCSC)ZBTB38
Gene fusions - Rearrangements
Tumor Fusion PortalZBTB38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB38
dbVarZBTB38
ClinVarZBTB38
1000_GenomesZBTB38 
Exome Variant ServerZBTB38
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP253461
Genomic Variants (DGV)ZBTB38 [DGVbeta]
DECIPHERZBTB38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB38 
Mutations
ICGC Data PortalZBTB38 
TCGA Data PortalZBTB38 
Broad Tumor PortalZBTB38
OASIS PortalZBTB38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB38
DgiDB (Drug Gene Interaction Database)ZBTB38
DoCM (Curated mutations)ZBTB38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB38 (select a term)
intoGenZBTB38
Cancer3DZBTB38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612218   
Orphanet
DisGeNETZBTB38
MedgenZBTB38
Genetic Testing Registry ZBTB38
NextProtQ8NAP3 [Medical]
TSGene253461
GENETestsZBTB38
Target ValidationZBTB38
Huge Navigator ZBTB38 [HugePedia]
snp3D : Map Gene to Disease253461
BioCentury BCIQZBTB38
ClinGenZBTB38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253461
Chemical/Pharm GKB GenePA142670542
Clinical trialZBTB38
Miscellaneous
canSAR (ICR)ZBTB38 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB38
EVEXZBTB38
GoPubMedZBTB38
iHOPZBTB38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:09:27 CET 2017

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