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ZBTB39 (zinc finger and BTB domain containing 39)

Identity

Alias_symbol (synonym)KIAA0352
ZNF922
Other alias
HGNC (Hugo) ZBTB39
LocusID (NCBI) 9880
Atlas_Id 75860
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56998833 and ends at 57006513 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB39   29014
Cards
Entrez_Gene (NCBI)ZBTB39  9880  zinc finger and BTB domain containing 39
AliasesZNF922
GeneCards (Weizmann)ZBTB39
Ensembl hg19 (Hinxton)ENSG00000166860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166860 [Gene_View]  chr12:56998833-57006513 [Contig_View]  ZBTB39 [Vega]
ICGC DataPortalENSG00000166860
TCGA cBioPortalZBTB39
AceView (NCBI)ZBTB39
Genatlas (Paris)ZBTB39
WikiGenes9880
SOURCE (Princeton)ZBTB39
Genetics Home Reference (NIH)ZBTB39
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB39  -     chr12:56998833-57006513 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB39  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblZBTB39 - 12q13.3 [CytoView hg19]  ZBTB39 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBIZBTB39 [Mapview hg19]  ZBTB39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002350 AK292468 BC140890 BC146867 BC152461
RefSeq transcript (Entrez)NM_014830
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB39
Cluster EST : UnigeneHs.591025 [ NCBI ]
CGAP (NCI)Hs.591025
Alternative Splicing GalleryENSG00000166860
Gene ExpressionZBTB39 [ NCBI-GEO ]   ZBTB39 [ EBI - ARRAY_EXPRESS ]   ZBTB39 [ SEEK ]   ZBTB39 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9880
GTEX Portal (Tissue expression)ZBTB39
Human Protein AtlasENSG00000166860-ZBTB39 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15060   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15060  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15060
Splice isoforms : SwissVarO15060
PhosPhoSitePlusO15060
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB39
DMDM Disease mutations9880
Blocks (Seattle)ZBTB39
SuperfamilyO15060
Human Protein Atlas [tissue]ENSG00000166860-ZBTB39 [tissue]
Peptide AtlasO15060
HPRD13796
IPIIPI00006589   
Protein Interaction databases
DIP (DOE-UCLA)O15060
IntAct (EBI)O15060
FunCoupENSG00000166860
BioGRIDZBTB39
STRING (EMBL)ZBTB39
ZODIACZBTB39
Ontologies - Pathways
QuickGOO15060
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB39
Atlas of Cancer Signalling NetworkZBTB39
Wikipedia pathwaysZBTB39
Orthology - Evolution
OrthoDB9880
GeneTree (enSembl)ENSG00000166860
Phylogenetic Trees/Animal Genes : TreeFamZBTB39
HOVERGENO15060
HOGENOMO15060
Homologs : HomoloGeneZBTB39
Homology/Alignments : Family Browser (UCSC)ZBTB39
Gene fusions - Rearrangements
Tumor Fusion PortalZBTB39
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB39
dbVarZBTB39
ClinVarZBTB39
1000_GenomesZBTB39 
Exome Variant ServerZBTB39
ExAC (Exome Aggregation Consortium)ENSG00000166860
GNOMAD BrowserENSG00000166860
Genetic variants : HAPMAP9880
Genomic Variants (DGV)ZBTB39 [DGVbeta]
DECIPHERZBTB39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB39 
Mutations
ICGC Data PortalZBTB39 
TCGA Data PortalZBTB39 
Broad Tumor PortalZBTB39
OASIS PortalZBTB39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB39
DgiDB (Drug Gene Interaction Database)ZBTB39
DoCM (Curated mutations)ZBTB39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB39 (select a term)
intoGenZBTB39
Cancer3DZBTB39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZBTB39
MedgenZBTB39
Genetic Testing Registry ZBTB39
NextProtO15060 [Medical]
TSGene9880
GENETestsZBTB39
Target ValidationZBTB39
Huge Navigator ZBTB39 [HugePedia]
snp3D : Map Gene to Disease9880
BioCentury BCIQZBTB39
ClinGenZBTB39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9880
Chemical/Pharm GKB GenePA142670543
Clinical trialZBTB39
Miscellaneous
canSAR (ICR)ZBTB39 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB39
EVEXZBTB39
GoPubMedZBTB39
iHOPZBTB39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:43 CET 2017

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