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ZBTB40 (zinc finger and BTB domain containing 40)

Identity

Alias_symbol (synonym)KIAA0478
ZNF923
Other alias
HGNC (Hugo) ZBTB40
LocusID (NCBI) 9923
Atlas_Id 75861
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 22778344 and ends at 22857650 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHD4 (12p13.31) / ZBTB40 (1p36.12)ZBTB40 (1p36.12) / VPS13D (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB40   29045
Cards
Entrez_Gene (NCBI)ZBTB40  9923  zinc finger and BTB domain containing 40
AliasesZNF923
GeneCards (Weizmann)ZBTB40
Ensembl hg19 (Hinxton)ENSG00000184677 [Gene_View]  chr1:22778344-22857650 [Contig_View]  ZBTB40 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184677 [Gene_View]  chr1:22778344-22857650 [Contig_View]  ZBTB40 [Vega]
ICGC DataPortalENSG00000184677
TCGA cBioPortalZBTB40
AceView (NCBI)ZBTB40
Genatlas (Paris)ZBTB40
WikiGenes9923
SOURCE (Princeton)ZBTB40
Genetics Home Reference (NIH)ZBTB40
Genomic and cartography
GoldenPath hg19 (UCSC)ZBTB40  -     chr1:22778344-22857650 +  1p36.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZBTB40  -     1p36.12   [Description]    (hg38-Dec_2013)
EnsemblZBTB40 - 1p36.12 [CytoView hg19]  ZBTB40 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIZBTB40 [Mapview hg19]  ZBTB40 [Mapview hg38]
OMIM612106   
Gene and transcription
Genbank (Entrez)AB007947 AK091019 AK095273 AK314747 BC114607
RefSeq transcript (Entrez)NM_001083621 NM_014870
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)ZBTB40
Cluster EST : UnigeneHs.418966 [ NCBI ]
CGAP (NCI)Hs.418966
Alternative Splicing GalleryENSG00000184677
Gene ExpressionZBTB40 [ NCBI-GEO ]   ZBTB40 [ EBI - ARRAY_EXPRESS ]   ZBTB40 [ SEEK ]   ZBTB40 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9923
GTEX Portal (Tissue expression)ZBTB40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUA8
Splice isoforms : SwissVarQ9NUA8
PhosPhoSitePlusQ9NUA8
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    ZBTB40    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB40
DMDM Disease mutations9923
Blocks (Seattle)ZBTB40
SuperfamilyQ9NUA8
Human Protein AtlasENSG00000184677
Peptide AtlasQ9NUA8
HPRD11086
IPIIPI00332552   IPI00883733   IPI00747417   IPI01026456   IPI00166232   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUA8
IntAct (EBI)Q9NUA8
FunCoupENSG00000184677
BioGRIDZBTB40
STRING (EMBL)ZBTB40
ZODIACZBTB40
Ontologies - Pathways
QuickGOQ9NUA8
Ontology : AmiGOmolecular_function  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular response to DNA damage stimulus  bone mineralization  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular response to DNA damage stimulus  bone mineralization  metal ion binding  
NDEx NetworkZBTB40
Atlas of Cancer Signalling NetworkZBTB40
Wikipedia pathwaysZBTB40
Orthology - Evolution
OrthoDB9923
GeneTree (enSembl)ENSG00000184677
Phylogenetic Trees/Animal Genes : TreeFamZBTB40
HOVERGENQ9NUA8
HOGENOMQ9NUA8
Homologs : HomoloGeneZBTB40
Homology/Alignments : Family Browser (UCSC)ZBTB40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB40
dbVarZBTB40
ClinVarZBTB40
1000_GenomesZBTB40 
Exome Variant ServerZBTB40
ExAC (Exome Aggregation Consortium)ZBTB40 (select the gene name)
Genetic variants : HAPMAP9923
Genomic Variants (DGV)ZBTB40 [DGVbeta]
DECIPHER (Syndromes)1:22778344-22857650  ENSG00000184677
CONAN: Copy Number AnalysisZBTB40 
Mutations
ICGC Data PortalZBTB40 
TCGA Data PortalZBTB40 
Broad Tumor PortalZBTB40
OASIS PortalZBTB40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB40
DgiDB (Drug Gene Interaction Database)ZBTB40
DoCM (Curated mutations)ZBTB40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB40 (select a term)
intoGenZBTB40
Cancer3DZBTB40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612106   
Orphanet
MedgenZBTB40
Genetic Testing Registry ZBTB40
NextProtQ9NUA8 [Medical]
TSGene9923
GENETestsZBTB40
Huge Navigator ZBTB40 [HugePedia]
snp3D : Map Gene to Disease9923
BioCentury BCIQZBTB40
ClinGenZBTB40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9923
Chemical/Pharm GKB GenePA142670544
Clinical trialZBTB40
Miscellaneous
canSAR (ICR)ZBTB40 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB40
EVEXZBTB40
GoPubMedZBTB40
iHOPZBTB40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:06 CET 2017

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