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ZBTB42 (zinc finger and BTB domain containing 42)

Identity

Alias_symbol (synonym)ZNF925
Other aliasLCCS6
HGNC (Hugo) ZBTB42
LocusID (NCBI) 100128927
Atlas_Id 75863
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 104801181 and ends at 104804711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL14 (6p21.1) / ZBTB42 (14q32.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB42   32550
Cards
Entrez_Gene (NCBI)ZBTB42  100128927  zinc finger and BTB domain containing 42
AliasesLCCS6; ZNF925
GeneCards (Weizmann)ZBTB42
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:104801181-104804711 [Contig_View]  ZBTB42 [Vega]
TCGA cBioPortalZBTB42
AceView (NCBI)ZBTB42
Genatlas (Paris)ZBTB42
WikiGenes100128927
SOURCE (Princeton)ZBTB42
Genetics Home Reference (NIH)ZBTB42
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB42  -     chr14:104801181-104804711 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB42  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblZBTB42 - 14q32.33 [CytoView hg19]  ZBTB42 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIZBTB42 [Mapview hg19]  ZBTB42 [Mapview hg38]
OMIM613915   616248   
Gene and transcription
Genbank (Entrez)AK125003 AL138144 AX721091 BC157833 BC171822
RefSeq transcript (Entrez)NM_001137601
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB42
Cluster EST : UnigeneHs.170853 [ NCBI ]
CGAP (NCI)Hs.170853
Gene ExpressionZBTB42 [ NCBI-GEO ]   ZBTB42 [ EBI - ARRAY_EXPRESS ]   ZBTB42 [ SEEK ]   ZBTB42 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128927
GTEX Portal (Tissue expression)ZBTB42
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RXF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RXF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RXF5
Splice isoforms : SwissVarB2RXF5
PhosPhoSitePlusB2RXF5
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB42
DMDM Disease mutations100128927
Blocks (Seattle)ZBTB42
SuperfamilyB2RXF5
Peptide AtlasB2RXF5
IPIIPI00887704   
Protein Interaction databases
DIP (DOE-UCLA)B2RXF5
IntAct (EBI)B2RXF5
BioGRIDZBTB42
STRING (EMBL)ZBTB42
ZODIACZBTB42
Ontologies - Pathways
QuickGOB2RXF5
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  nucleoplasm  cytoplasm  plasma membrane  transcription, DNA-templated  muscle organ development  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  nucleoplasm  cytoplasm  plasma membrane  transcription, DNA-templated  muscle organ development  metal ion binding  
NDEx NetworkZBTB42
Atlas of Cancer Signalling NetworkZBTB42
Wikipedia pathwaysZBTB42
Orthology - Evolution
OrthoDB100128927
Phylogenetic Trees/Animal Genes : TreeFamZBTB42
HOVERGENB2RXF5
HOGENOMB2RXF5
Homologs : HomoloGeneZBTB42
Homology/Alignments : Family Browser (UCSC)ZBTB42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB42
dbVarZBTB42
ClinVarZBTB42
1000_GenomesZBTB42 
Exome Variant ServerZBTB42
ExAC (Exome Aggregation Consortium)ZBTB42 (select the gene name)
Genetic variants : HAPMAP100128927
Genomic Variants (DGV)ZBTB42 [DGVbeta]
DECIPHERZBTB42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB42 
Mutations
ICGC Data PortalZBTB42 
TCGA Data PortalZBTB42 
Broad Tumor PortalZBTB42
OASIS PortalZBTB42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB42
DgiDB (Drug Gene Interaction Database)ZBTB42
DoCM (Curated mutations)ZBTB42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB42 (select a term)
intoGenZBTB42
Cancer3DZBTB42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613915    616248   
Orphanet
MedgenZBTB42
Genetic Testing Registry ZBTB42
NextProtB2RXF5 [Medical]
TSGene100128927
GENETestsZBTB42
Huge Navigator ZBTB42 [HugePedia]
snp3D : Map Gene to Disease100128927
BioCentury BCIQZBTB42
ClinGenZBTB42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128927
Chemical/Pharm GKB GenePA144596242
Clinical trialZBTB42
Miscellaneous
canSAR (ICR)ZBTB42 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB42
EVEXZBTB42
GoPubMedZBTB42
iHOPZBTB42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:02 CEST 2017

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