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ZBTB43 (zinc finger and BTB domain containing 43)

Identity

Alias_namesZNF297B
zinc finger protein 297B
Alias_symbol (synonym)KIAA0414
ZNF-X
FLJ22470
ZBTB22B
Other alias
HGNC (Hugo) ZBTB43
LocusID (NCBI) 23099
Atlas_Id 75864
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 126805006 and ends at 126838208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
OCIAD1 (4p11) / ZBTB43 (9q33.3)SLC34A2 (4p15.2) / ZBTB43 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB43   17908
Cards
Entrez_Gene (NCBI)ZBTB43  23099  zinc finger and BTB domain containing 43
AliasesZBTB22B; ZNF-X; ZNF297B
GeneCards (Weizmann)ZBTB43
Ensembl hg19 (Hinxton)ENSG00000169155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169155 [Gene_View]  chr9:126805006-126838208 [Contig_View]  ZBTB43 [Vega]
ICGC DataPortalENSG00000169155
TCGA cBioPortalZBTB43
AceView (NCBI)ZBTB43
Genatlas (Paris)ZBTB43
WikiGenes23099
SOURCE (Princeton)ZBTB43
Genetics Home Reference (NIH)ZBTB43
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB43  -     chr9:126805006-126838208 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB43  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblZBTB43 - 9q33.3 [CytoView hg19]  ZBTB43 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIZBTB43 [Mapview hg19]  ZBTB43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007874 AF049907 AK026123 BC008828 BT007194
RefSeq transcript (Entrez)NM_001135776 NM_014007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB43
Cluster EST : UnigeneHs.355581 [ NCBI ]
CGAP (NCI)Hs.355581
Alternative Splicing GalleryENSG00000169155
Gene ExpressionZBTB43 [ NCBI-GEO ]   ZBTB43 [ EBI - ARRAY_EXPRESS ]   ZBTB43 [ SEEK ]   ZBTB43 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23099
GTEX Portal (Tissue expression)ZBTB43
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43298   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43298  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43298
Splice isoforms : SwissVarO43298
PhosPhoSitePlusO43298
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB43
DMDM Disease mutations23099
Blocks (Seattle)ZBTB43
PDB (SRS)2CSH   
PDB (PDBSum)2CSH   
PDB (IMB)2CSH   
PDB (RSDB)2CSH   
Structural Biology KnowledgeBase2CSH   
SCOP (Structural Classification of Proteins)2CSH   
CATH (Classification of proteins structures)2CSH   
SuperfamilyO43298
Human Protein AtlasENSG00000169155
Peptide AtlasO43298
HPRD08346
IPIIPI00022264   IPI00646202   
Protein Interaction databases
DIP (DOE-UCLA)O43298
IntAct (EBI)O43298
FunCoupENSG00000169155
BioGRIDZBTB43
STRING (EMBL)ZBTB43
ZODIACZBTB43
Ontologies - Pathways
QuickGOO43298
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB43
Atlas of Cancer Signalling NetworkZBTB43
Wikipedia pathwaysZBTB43
Orthology - Evolution
OrthoDB23099
GeneTree (enSembl)ENSG00000169155
Phylogenetic Trees/Animal Genes : TreeFamZBTB43
HOVERGENO43298
HOGENOMO43298
Homologs : HomoloGeneZBTB43
Homology/Alignments : Family Browser (UCSC)ZBTB43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB43
dbVarZBTB43
ClinVarZBTB43
1000_GenomesZBTB43 
Exome Variant ServerZBTB43
ExAC (Exome Aggregation Consortium)ZBTB43 (select the gene name)
Genetic variants : HAPMAP23099
Genomic Variants (DGV)ZBTB43 [DGVbeta]
DECIPHERZBTB43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB43 
Mutations
ICGC Data PortalZBTB43 
TCGA Data PortalZBTB43 
Broad Tumor PortalZBTB43
OASIS PortalZBTB43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB43
DgiDB (Drug Gene Interaction Database)ZBTB43
DoCM (Curated mutations)ZBTB43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB43 (select a term)
intoGenZBTB43
Cancer3DZBTB43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZBTB43
Genetic Testing Registry ZBTB43
NextProtO43298 [Medical]
TSGene23099
GENETestsZBTB43
Target ValidationZBTB43
Huge Navigator ZBTB43 [HugePedia]
snp3D : Map Gene to Disease23099
BioCentury BCIQZBTB43
ClinGenZBTB43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23099
Chemical/Pharm GKB GenePA38257
Clinical trialZBTB43
Miscellaneous
canSAR (ICR)ZBTB43 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB43
EVEXZBTB43
GoPubMedZBTB43
iHOPZBTB43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:28 CEST 2017

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