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ZBTB43 (zinc finger and BTB domain containing 43)

Identity

Alias (NCBI)ZBTB22B
ZNF-X
ZNF297B
HGNC (Hugo) ZBTB43
HGNC Alias symbKIAA0414
ZNF-X
FLJ22470
ZBTB22B
HGNC Previous nameZNF297B
HGNC Previous namezinc finger protein 297B
LocusID (NCBI) 23099
Atlas_Id 75864
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 126805040 and ends at 126838208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OCIAD1 (4p11) / ZBTB43 (9q33.3)SLC34A2 (4p15.2) / ZBTB43 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZBTB43   17908
Cards
Entrez_Gene (NCBI)ZBTB43    zinc finger and BTB domain containing 43
AliasesZBTB22B; ZNF-X; ZNF297B
GeneCards (Weizmann)ZBTB43
Ensembl hg19 (Hinxton)ENSG00000169155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169155 [Gene_View]  ENSG00000169155 [Sequence]  chr9:126805040-126838208 [Contig_View]  ZBTB43 [Vega]
ICGC DataPortalENSG00000169155
TCGA cBioPortalZBTB43
AceView (NCBI)ZBTB43
Genatlas (Paris)ZBTB43
SOURCE (Princeton)ZBTB43
Genetics Home Reference (NIH)ZBTB43
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB43  -     chr9:126805040-126838208 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB43  -     9q33.3   [Description]    (hg19-Feb_2009)
GoldenPathZBTB43 - 9q33.3 [CytoView hg19]  ZBTB43 - 9q33.3 [CytoView hg38]
ImmunoBaseENSG00000169155
Genome Data Viewer NCBIZBTB43 [Mapview hg19]  
OMIM618676   
Gene and transcription
Genbank (Entrez)AB007874 AF049907 AK026123 BC008828 BT007194
RefSeq transcript (Entrez)NM_001135776 NM_014007
Consensus coding sequences : CCDS (NCBI)ZBTB43
Gene ExpressionZBTB43 [ NCBI-GEO ]   ZBTB43 [ EBI - ARRAY_EXPRESS ]   ZBTB43 [ SEEK ]   ZBTB43 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB43 [ Firebrowse - Broad ]
GenevisibleExpression of ZBTB43 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23099
GTEX Portal (Tissue expression)ZBTB43
Human Protein AtlasENSG00000169155-ZBTB43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43298   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43298  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43298
PhosPhoSitePlusO43298
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB43
PDB (RSDB)2CSH   
PDB Europe2CSH   
PDB (PDBSum)2CSH   
PDB (IMB)2CSH   
Structural Biology KnowledgeBase2CSH   
SCOP (Structural Classification of Proteins)2CSH   
CATH (Classification of proteins structures)2CSH   
SuperfamilyO43298
AlphaFold pdb e-kbO43298   
Human Protein Atlas [tissue]ENSG00000169155-ZBTB43 [tissue]
HPRD08346
Protein Interaction databases
DIP (DOE-UCLA)O43298
IntAct (EBI)O43298
BioGRIDZBTB43
STRING (EMBL)ZBTB43
ZODIACZBTB43
Ontologies - Pathways
QuickGOO43298
Ontology : AmiGOchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  sequence-specific double-stranded DNA binding  
NDEx NetworkZBTB43
Atlas of Cancer Signalling NetworkZBTB43
Wikipedia pathwaysZBTB43
Orthology - Evolution
OrthoDB23099
GeneTree (enSembl)ENSG00000169155
Phylogenetic Trees/Animal Genes : TreeFamZBTB43
Homologs : HomoloGeneZBTB43
Homology/Alignments : Family Browser (UCSC)ZBTB43
Gene fusions - Rearrangements
Fusion : QuiverZBTB43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB43
dbVarZBTB43
ClinVarZBTB43
MonarchZBTB43
1000_GenomesZBTB43 
Exome Variant ServerZBTB43
GNOMAD BrowserENSG00000169155
Varsome BrowserZBTB43
ACMGZBTB43 variants
VarityO43298
Genomic Variants (DGV)ZBTB43 [DGVbeta]
DECIPHERZBTB43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB43 
Mutations
ICGC Data PortalZBTB43 
TCGA Data PortalZBTB43 
Broad Tumor PortalZBTB43
OASIS PortalZBTB43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB43  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZBTB43
Mutations and Diseases : HGMDZBTB43
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZBTB43
DgiDB (Drug Gene Interaction Database)ZBTB43
DoCM (Curated mutations)ZBTB43
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB43
Cancer3DZBTB43
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618676   
Orphanet
DisGeNETZBTB43
MedgenZBTB43
Genetic Testing Registry ZBTB43
NextProtO43298 [Medical]
GENETestsZBTB43
Target ValidationZBTB43
Huge Navigator ZBTB43 [HugePedia]
ClinGenZBTB43
Clinical trials, drugs, therapy
MyCancerGenomeZBTB43
Protein Interactions : CTDZBTB43
Pharm GKB GenePA38257
PharosO43298
Clinical trialZBTB43
Miscellaneous
canSAR (ICR)ZBTB43
HarmonizomeZBTB43
DataMed IndexZBTB43
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZBTB43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:52 CEST 2021

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