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ZBTB47 (zinc finger and BTB domain containing 47)

Identity

Alias_namesZNF651
zinc finger protein 651
Alias_symbol (synonym)KIAA1190
DKFZp434N0615
Other alias
HGNC (Hugo) ZBTB47
LocusID (NCBI) 92999
Atlas_Id 75869
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42653684 and ends at 42667580 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB47   26955
Cards
Entrez_Gene (NCBI)ZBTB47  92999  zinc finger and BTB domain containing 47
AliasesZNF651
GeneCards (Weizmann)ZBTB47
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:42653684-42667580 [Contig_View]  ZBTB47 [Vega]
TCGA cBioPortalZBTB47
AceView (NCBI)ZBTB47
Genatlas (Paris)ZBTB47
WikiGenes92999
SOURCE (Princeton)ZBTB47
Genetics Home Reference (NIH)ZBTB47
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB47  -     chr3:42653684-42667580 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB47  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblZBTB47 - 3p22.1 [CytoView hg19]  ZBTB47 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIZBTB47 [Mapview hg19]  ZBTB47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033016 AK127065 AL133062 BC021855 BF509106
RefSeq transcript (Entrez)NM_145166
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB47
Cluster EST : UnigeneHs.409561 [ NCBI ]
CGAP (NCI)Hs.409561
Gene ExpressionZBTB47 [ NCBI-GEO ]   ZBTB47 [ EBI - ARRAY_EXPRESS ]   ZBTB47 [ SEEK ]   ZBTB47 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92999
GTEX Portal (Tissue expression)ZBTB47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFB7
Splice isoforms : SwissVarQ9UFB7
PhosPhoSitePlusQ9UFB7
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00651    pfam00096    pfam13912   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB47
DMDM Disease mutations92999
Blocks (Seattle)ZBTB47
SuperfamilyQ9UFB7
Peptide AtlasQ9UFB7
HPRD15888
IPIIPI00444845   IPI00926100   IPI00964456   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFB7
IntAct (EBI)Q9UFB7
BioGRIDZBTB47
STRING (EMBL)ZBTB47
ZODIACZBTB47
Ontologies - Pathways
QuickGOQ9UFB7
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB47
Atlas of Cancer Signalling NetworkZBTB47
Wikipedia pathwaysZBTB47
Orthology - Evolution
OrthoDB92999
Phylogenetic Trees/Animal Genes : TreeFamZBTB47
HOVERGENQ9UFB7
HOGENOMQ9UFB7
Homologs : HomoloGeneZBTB47
Homology/Alignments : Family Browser (UCSC)ZBTB47
Gene fusions - Rearrangements
Tumor Fusion PortalZBTB47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB47
dbVarZBTB47
ClinVarZBTB47
1000_GenomesZBTB47 
Exome Variant ServerZBTB47
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP92999
Genomic Variants (DGV)ZBTB47 [DGVbeta]
DECIPHERZBTB47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB47 
Mutations
ICGC Data PortalZBTB47 
TCGA Data PortalZBTB47 
Broad Tumor PortalZBTB47
OASIS PortalZBTB47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB47
DgiDB (Drug Gene Interaction Database)ZBTB47
DoCM (Curated mutations)ZBTB47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB47 (select a term)
intoGenZBTB47
Cancer3DZBTB47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZBTB47
MedgenZBTB47
Genetic Testing Registry ZBTB47
NextProtQ9UFB7 [Medical]
TSGene92999
GENETestsZBTB47
Target ValidationZBTB47
Huge Navigator ZBTB47 [HugePedia]
snp3D : Map Gene to Disease92999
BioCentury BCIQZBTB47
ClinGenZBTB47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92999
Chemical/Pharm GKB GenePA162409466
Clinical trialZBTB47
Miscellaneous
canSAR (ICR)ZBTB47 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB47
EVEXZBTB47
GoPubMedZBTB47
iHOPZBTB47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:27 CET 2017

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