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ZBTB6 (zinc finger and BTB domain containing 6)

Identity

Alias (NCBI)ZID
ZNF482
HGNC (Hugo) ZBTB6
HGNC Alias symbZID
HGNC Previous nameZNF482
HGNC Previous namezinc finger protein 482
LocusID (NCBI) 10773
Atlas_Id 75871
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122908056 and ends at 122913328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCA1 (9q31.1) / ZBTB6 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(9;9)(q31;q33) ABCA1/ZBTB6


External links

Nomenclature
HGNC (Hugo)ZBTB6   16764
Cards
Entrez_Gene (NCBI)ZBTB6    zinc finger and BTB domain containing 6
AliasesZID; ZNF482
GeneCards (Weizmann)ZBTB6
Ensembl hg19 (Hinxton)ENSG00000186130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186130 [Gene_View]  ENSG00000186130 [Sequence]  chr9:122908056-122913328 [Contig_View]  ZBTB6 [Vega]
ICGC DataPortalENSG00000186130
TCGA cBioPortalZBTB6
AceView (NCBI)ZBTB6
Genatlas (Paris)ZBTB6
SOURCE (Princeton)ZBTB6
Genetics Home Reference (NIH)ZBTB6
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB6  -     chr9:122908056-122913328 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB6  -     9q33.2   [Description]    (hg19-Feb_2009)
GoldenPathZBTB6 - 9q33.2 [CytoView hg19]  ZBTB6 - 9q33.2 [CytoView hg38]
ImmunoBaseENSG00000186130
genome Data Viewer NCBIZBTB6 [Mapview hg19]  
OMIM605976   
Gene and transcription
Genbank (Entrez)AK098650 AK292401 BC037282 BU600946 BX390688
RefSeq transcript (Entrez)NM_006626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB6
Alternative Splicing GalleryENSG00000186130
Gene ExpressionZBTB6 [ NCBI-GEO ]   ZBTB6 [ EBI - ARRAY_EXPRESS ]   ZBTB6 [ SEEK ]   ZBTB6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB6 [ Firebrowse - Broad ]
GenevisibleExpression of ZBTB6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10773
GTEX Portal (Tissue expression)ZBTB6
Human Protein AtlasENSG00000186130-ZBTB6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15916   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15916  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15916
Splice isoforms : SwissVarQ15916
PhosPhoSitePlusQ15916
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB6
Blocks (Seattle)ZBTB6
SuperfamilyQ15916
Human Protein Atlas [tissue]ENSG00000186130-ZBTB6 [tissue]
Peptide AtlasQ15916
HPRD09341
IPIIPI00009072   
Protein Interaction databases
DIP (DOE-UCLA)Q15916
IntAct (EBI)Q15916
BioGRIDZBTB6
STRING (EMBL)ZBTB6
ZODIACZBTB6
Ontologies - Pathways
QuickGOQ15916
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II regulatory region sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  nucleoplasm  mitochondrion  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II regulatory region sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  nucleoplasm  mitochondrion  metal ion binding  
NDEx NetworkZBTB6
Atlas of Cancer Signalling NetworkZBTB6
Wikipedia pathwaysZBTB6
Orthology - Evolution
OrthoDB10773
GeneTree (enSembl)ENSG00000186130
Phylogenetic Trees/Animal Genes : TreeFamZBTB6
HOGENOMQ15916
Homologs : HomoloGeneZBTB6
Homology/Alignments : Family Browser (UCSC)ZBTB6
Gene fusions - Rearrangements
Fusion : QuiverZBTB6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB6 [hg38]
dbVarZBTB6
ClinVarZBTB6
MonarchZBTB6
1000_GenomesZBTB6 
Exome Variant ServerZBTB6
GNOMAD BrowserENSG00000186130
Varsome BrowserZBTB6
Genomic Variants (DGV)ZBTB6 [DGVbeta]
DECIPHERZBTB6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB6 
Mutations
ICGC Data PortalZBTB6 
TCGA Data PortalZBTB6 
Broad Tumor PortalZBTB6
OASIS PortalZBTB6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZBTB6
Mutations and Diseases : HGMDZBTB6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB6
DgiDB (Drug Gene Interaction Database)ZBTB6
DoCM (Curated mutations)ZBTB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB6 (select a term)
intoGenZBTB6
Cancer3DZBTB6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605976   
Orphanet
DisGeNETZBTB6
MedgenZBTB6
Genetic Testing Registry ZBTB6
NextProtQ15916 [Medical]
GENETestsZBTB6
Target ValidationZBTB6
Huge Navigator ZBTB6 [HugePedia]
ClinGenZBTB6
Clinical trials, drugs, therapy
MyCancerGenomeZBTB6
Protein Interactions : CTD
Pharm GKB GenePA134939601
Clinical trialZBTB6
Miscellaneous
canSAR (ICR)ZBTB6 (select the gene name)
HarmonizomeZBTB6
DataMed IndexZBTB6
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB6
EVEXZBTB6
GoPubMedZBTB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:35:14 CET 2020

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