Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZBTB6 (zinc finger and BTB domain containing 6)

Identity

Alias_namesZNF482
zinc finger protein 482
Alias_symbol (synonym)ZID
Other alias
HGNC (Hugo) ZBTB6
LocusID (NCBI) 10773
Atlas_Id 75871
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 125670335 and ends at 125675607 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCA1 (9q31.1) / ZBTB6 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB6   16764
Cards
Entrez_Gene (NCBI)ZBTB6  10773  zinc finger and BTB domain containing 6
AliasesZID; ZNF482
GeneCards (Weizmann)ZBTB6
Ensembl hg19 (Hinxton)ENSG00000186130 [Gene_View]  chr9:125670335-125675607 [Contig_View]  ZBTB6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186130 [Gene_View]  chr9:125670335-125675607 [Contig_View]  ZBTB6 [Vega]
ICGC DataPortalENSG00000186130
TCGA cBioPortalZBTB6
AceView (NCBI)ZBTB6
Genatlas (Paris)ZBTB6
WikiGenes10773
SOURCE (Princeton)ZBTB6
Genetics Home Reference (NIH)ZBTB6
Genomic and cartography
GoldenPath hg19 (UCSC)ZBTB6  -     chr9:125670335-125675607 -  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZBTB6  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblZBTB6 - 9q33.2 [CytoView hg19]  ZBTB6 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIZBTB6 [Mapview hg19]  ZBTB6 [Mapview hg38]
OMIM605976   
Gene and transcription
Genbank (Entrez)AK098650 AK292401 BC037282 BU600946 BX390688
RefSeq transcript (Entrez)NM_006626
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ZBTB6
Cluster EST : UnigeneHs.654596 [ NCBI ]
CGAP (NCI)Hs.654596
Alternative Splicing GalleryENSG00000186130
Gene ExpressionZBTB6 [ NCBI-GEO ]   ZBTB6 [ EBI - ARRAY_EXPRESS ]   ZBTB6 [ SEEK ]   ZBTB6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10773
GTEX Portal (Tissue expression)ZBTB6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15916   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15916  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15916
Splice isoforms : SwissVarQ15916
PhosPhoSitePlusQ15916
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00651    pfam00096   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB6
DMDM Disease mutations10773
Blocks (Seattle)ZBTB6
SuperfamilyQ15916
Human Protein AtlasENSG00000186130
Peptide AtlasQ15916
HPRD09341
IPIIPI00009072   
Protein Interaction databases
DIP (DOE-UCLA)Q15916
IntAct (EBI)Q15916
FunCoupENSG00000186130
BioGRIDZBTB6
STRING (EMBL)ZBTB6
ZODIACZBTB6
Ontologies - Pathways
QuickGOQ15916
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription  DNA binding  protein binding  nucleus  transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription  DNA binding  protein binding  nucleus  transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB6
Atlas of Cancer Signalling NetworkZBTB6
Wikipedia pathwaysZBTB6
Orthology - Evolution
OrthoDB10773
GeneTree (enSembl)ENSG00000186130
Phylogenetic Trees/Animal Genes : TreeFamZBTB6
HOVERGENQ15916
HOGENOMQ15916
Homologs : HomoloGeneZBTB6
Homology/Alignments : Family Browser (UCSC)ZBTB6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB6
dbVarZBTB6
ClinVarZBTB6
1000_GenomesZBTB6 
Exome Variant ServerZBTB6
ExAC (Exome Aggregation Consortium)ZBTB6 (select the gene name)
Genetic variants : HAPMAP10773
Genomic Variants (DGV)ZBTB6 [DGVbeta]
DECIPHER (Syndromes)9:125670335-125675607  ENSG00000186130
CONAN: Copy Number AnalysisZBTB6 
Mutations
ICGC Data PortalZBTB6 
TCGA Data PortalZBTB6 
Broad Tumor PortalZBTB6
OASIS PortalZBTB6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB6
DgiDB (Drug Gene Interaction Database)ZBTB6
DoCM (Curated mutations)ZBTB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB6 (select a term)
intoGenZBTB6
Cancer3DZBTB6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605976   
Orphanet
MedgenZBTB6
Genetic Testing Registry ZBTB6
NextProtQ15916 [Medical]
TSGene10773
GENETestsZBTB6
Huge Navigator ZBTB6 [HugePedia]
snp3D : Map Gene to Disease10773
BioCentury BCIQZBTB6
ClinGenZBTB6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10773
Chemical/Pharm GKB GenePA134939601
Clinical trialZBTB6
Miscellaneous
canSAR (ICR)ZBTB6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB6
EVEXZBTB6
GoPubMedZBTB6
iHOPZBTB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:52:08 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.