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ZBTB8B (zinc finger and BTB domain containing 8B)

Identity

Alias (NCBI)ZNF916B
HGNC (Hugo) ZBTB8B
HGNC Alias symbRP1-27O5.1
DKFZp547H154
ZNF916B
LocusID (NCBI) 728116
Atlas_Id 54790
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32465072 and ends at 32496685 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ORAOV1 (11q13.3) / ZBTB8B (1p35.1)ZBTB8B (1p35.1) / CDH12 (5p14.3)ZBTB8B (1p35.1) / TRAF3IP1 (2q37.3)
ZBTB8B (1p35.1) / XYLT1 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZBTB8B   37057
Cards
Entrez_Gene (NCBI)ZBTB8B    zinc finger and BTB domain containing 8B
AliasesZNF916B
GeneCards (Weizmann)ZBTB8B
Ensembl hg19 (Hinxton)ENSG00000273274 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273274 [Gene_View]  ENSG00000273274 [Sequence]  chr1:32465072-32496685 [Contig_View]  ZBTB8B [Vega]
ICGC DataPortalENSG00000273274
TCGA cBioPortalZBTB8B
AceView (NCBI)ZBTB8B
Genatlas (Paris)ZBTB8B
SOURCE (Princeton)ZBTB8B
Genetics Home Reference (NIH)ZBTB8B
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB8B  -     chr1:32465072-32496685 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB8B  -     1p35.1   [Description]    (hg19-Feb_2009)
GoldenPathZBTB8B - 1p35.1 [CytoView hg19]  ZBTB8B - 1p35.1 [CytoView hg38]
ImmunoBaseENSG00000273274
Genome Data Viewer NCBIZBTB8B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AL442095
RefSeq transcript (Entrez)NM_001145720
Consensus coding sequences : CCDS (NCBI)ZBTB8B
Gene ExpressionZBTB8B [ NCBI-GEO ]   ZBTB8B [ EBI - ARRAY_EXPRESS ]   ZBTB8B [ SEEK ]   ZBTB8B [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB8B [ Firebrowse - Broad ]
GenevisibleExpression of ZBTB8B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728116
GTEX Portal (Tissue expression)ZBTB8B
Human Protein AtlasENSG00000273274-ZBTB8B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAP8
PhosPhoSitePlusQ8NAP8
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB8B
SuperfamilyQ8NAP8
AlphaFold pdb e-kbQ8NAP8   
Human Protein Atlas [tissue]ENSG00000273274-ZBTB8B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8NAP8
IntAct (EBI)Q8NAP8
BioGRIDZBTB8B
STRING (EMBL)ZBTB8B
ZODIACZBTB8B
Ontologies - Pathways
QuickGOQ8NAP8
Ontology : AmiGOchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZBTB8B
Atlas of Cancer Signalling NetworkZBTB8B
Wikipedia pathwaysZBTB8B
Orthology - Evolution
OrthoDB728116
GeneTree (enSembl)ENSG00000273274
Phylogenetic Trees/Animal Genes : TreeFamZBTB8B
Homologs : HomoloGeneZBTB8B
Homology/Alignments : Family Browser (UCSC)ZBTB8B
Gene fusions - Rearrangements
Fusion : MitelmanZBTB8B/TRAF3IP1 [1p35.1/2q37.3]  
Fusion : QuiverZBTB8B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB8B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB8B
dbVarZBTB8B
ClinVarZBTB8B
MonarchZBTB8B
1000_GenomesZBTB8B 
Exome Variant ServerZBTB8B
GNOMAD BrowserENSG00000273274
Varsome BrowserZBTB8B
ACMGZBTB8B variants
VarityQ8NAP8
Genomic Variants (DGV)ZBTB8B [DGVbeta]
DECIPHERZBTB8B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB8B 
Mutations
ICGC Data PortalZBTB8B 
TCGA Data PortalZBTB8B 
Broad Tumor PortalZBTB8B
OASIS PortalZBTB8B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB8B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZBTB8B
Mutations and Diseases : HGMDZBTB8B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZBTB8B
DgiDB (Drug Gene Interaction Database)ZBTB8B
DoCM (Curated mutations)ZBTB8B
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB8B
Cancer3DZBTB8B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZBTB8B
MedgenZBTB8B
Genetic Testing Registry ZBTB8B
NextProtQ8NAP8 [Medical]
GENETestsZBTB8B
Target ValidationZBTB8B
Huge Navigator ZBTB8B [HugePedia]
ClinGenZBTB8B
Clinical trials, drugs, therapy
MyCancerGenomeZBTB8B
Protein Interactions : CTDZBTB8B
Pharm GKB GenePA164727642
PharosQ8NAP8
Clinical trialZBTB8B
Miscellaneous
canSAR (ICR)ZBTB8B
HarmonizomeZBTB8B
DataMed IndexZBTB8B
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZBTB8B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:48 CEST 2021

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