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ZBTB8OS (zinc finger and BTB domain containing 8 opposite strand)

Identity

Alias_symbol (synonym)ARCH
Other aliasARCH2
HGNC (Hugo) ZBTB8OS
LocusID (NCBI) 339487
Atlas_Id 56293
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32621216 and ends at 32650590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZBTB8OS (1p35.1) / IGF2BP1 (17q21.32)ZBTB8OS (1p35.1) / YARS (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB8OS   24094
Cards
Entrez_Gene (NCBI)ZBTB8OS  339487  zinc finger and BTB domain containing 8 opposite strand
AliasesARCH; ARCH2
GeneCards (Weizmann)ZBTB8OS
Ensembl hg19 (Hinxton)ENSG00000176261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176261 [Gene_View]  chr1:32621216-32650590 [Contig_View]  ZBTB8OS [Vega]
ICGC DataPortalENSG00000176261
TCGA cBioPortalZBTB8OS
AceView (NCBI)ZBTB8OS
Genatlas (Paris)ZBTB8OS
WikiGenes339487
SOURCE (Princeton)ZBTB8OS
Genetics Home Reference (NIH)ZBTB8OS
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB8OS  -     chr1:32621216-32650590 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB8OS  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblZBTB8OS - 1p35.1 [CytoView hg19]  ZBTB8OS - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIZBTB8OS [Mapview hg19]  ZBTB8OS [Mapview hg38]
OMIM615891   
Gene and transcription
Genbank (Entrez)AA316493 AK289480 AY099493 AY099494 AY151084
RefSeq transcript (Entrez)NM_001308135 NM_001308136 NM_001308137 NM_001308138 NM_001308139 NM_001308140 NM_001308141 NM_001330475 NM_178547
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZBTB8OS
Cluster EST : UnigeneHs.655921 [ NCBI ]
CGAP (NCI)Hs.655921
Alternative Splicing GalleryENSG00000176261
Gene ExpressionZBTB8OS [ NCBI-GEO ]   ZBTB8OS [ EBI - ARRAY_EXPRESS ]   ZBTB8OS [ SEEK ]   ZBTB8OS [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB8OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339487
GTEX Portal (Tissue expression)ZBTB8OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWT0
Splice isoforms : SwissVarQ8IWT0
PhosPhoSitePlusQ8IWT0
Domains : Interpro (EBI)Archease    Archease_dom   
Domain families : Pfam (Sanger)Archease (PF01951)   
Domain families : Pfam (NCBI)pfam01951   
Domain structure : Prodom (Prabi Lyon)PD012969 (PD012969)   
Conserved Domain (NCBI)ZBTB8OS
DMDM Disease mutations339487
Blocks (Seattle)ZBTB8OS
SuperfamilyQ8IWT0
Human Protein AtlasENSG00000176261
Peptide AtlasQ8IWT0
HPRD12470
IPIIPI00217375   IPI00385304   IPI00640902   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWT0
IntAct (EBI)Q8IWT0
FunCoupENSG00000176261
BioGRIDZBTB8OS
STRING (EMBL)ZBTB8OS
ZODIACZBTB8OS
Ontologies - Pathways
QuickGOQ8IWT0
Ontology : AmiGOnucleoplasm  tRNA splicing, via endonucleolytic cleavage and ligation  tRNA splicing, via endonucleolytic cleavage and ligation  metal ion binding  extracellular exosome  tRNA-splicing ligase complex  
Ontology : EGO-EBInucleoplasm  tRNA splicing, via endonucleolytic cleavage and ligation  tRNA splicing, via endonucleolytic cleavage and ligation  metal ion binding  extracellular exosome  tRNA-splicing ligase complex  
NDEx NetworkZBTB8OS
Atlas of Cancer Signalling NetworkZBTB8OS
Wikipedia pathwaysZBTB8OS
Orthology - Evolution
OrthoDB339487
GeneTree (enSembl)ENSG00000176261
Phylogenetic Trees/Animal Genes : TreeFamZBTB8OS
HOVERGENQ8IWT0
HOGENOMQ8IWT0
Homologs : HomoloGeneZBTB8OS
Homology/Alignments : Family Browser (UCSC)ZBTB8OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB8OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB8OS
dbVarZBTB8OS
ClinVarZBTB8OS
1000_GenomesZBTB8OS 
Exome Variant ServerZBTB8OS
ExAC (Exome Aggregation Consortium)ZBTB8OS (select the gene name)
Genetic variants : HAPMAP339487
Genomic Variants (DGV)ZBTB8OS [DGVbeta]
DECIPHERZBTB8OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB8OS 
Mutations
ICGC Data PortalZBTB8OS 
TCGA Data PortalZBTB8OS 
Broad Tumor PortalZBTB8OS
OASIS PortalZBTB8OS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB8OS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB8OS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB8OS
DgiDB (Drug Gene Interaction Database)ZBTB8OS
DoCM (Curated mutations)ZBTB8OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB8OS (select a term)
intoGenZBTB8OS
Cancer3DZBTB8OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615891   
Orphanet
MedgenZBTB8OS
Genetic Testing Registry ZBTB8OS
NextProtQ8IWT0 [Medical]
TSGene339487
GENETestsZBTB8OS
Target ValidationZBTB8OS
Huge Navigator ZBTB8OS [HugePedia]
snp3D : Map Gene to Disease339487
BioCentury BCIQZBTB8OS
ClinGenZBTB8OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339487
Chemical/Pharm GKB GenePA142670540
Clinical trialZBTB8OS
Miscellaneous
canSAR (ICR)ZBTB8OS (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB8OS
EVEXZBTB8OS
GoPubMedZBTB8OS
iHOPZBTB8OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:19:13 CEST 2017

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