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ZBTB9 (zinc finger and BTB domain containing 9)

Identity

Alias_symbol (synonym)MGC23166
ZNF919
Other alias
HGNC (Hugo) ZBTB9
LocusID (NCBI) 221504
Atlas_Id 75874
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33454579 and ends at 33457543 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZBTB9   28323
Cards
Entrez_Gene (NCBI)ZBTB9  221504  zinc finger and BTB domain containing 9
AliasesZNF919
GeneCards (Weizmann)ZBTB9
Ensembl hg19 (Hinxton)ENSG00000213588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213588 [Gene_View]  ENSG00000213588 [Sequence]  chr6:33454579-33457543 [Contig_View]  ZBTB9 [Vega]
ICGC DataPortalENSG00000213588
TCGA cBioPortalZBTB9
AceView (NCBI)ZBTB9
Genatlas (Paris)ZBTB9
WikiGenes221504
SOURCE (Princeton)ZBTB9
Genetics Home Reference (NIH)ZBTB9
Genomic and cartography
GoldenPath hg38 (UCSC)ZBTB9  -     chr6:33454579-33457543 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZBTB9  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblZBTB9 - 6p21.32 [CytoView hg19]  ZBTB9 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIZBTB9 [Mapview hg19]  ZBTB9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122644 AK313571 BC014978 BC048321 BX488390
RefSeq transcript (Entrez)NM_152735
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_167249
Consensus coding sequences : CCDS (NCBI)ZBTB9
Cluster EST : UnigeneHs.591805 [ NCBI ]
CGAP (NCI)Hs.591805
Alternative Splicing GalleryENSG00000213588
Gene ExpressionZBTB9 [ NCBI-GEO ]   ZBTB9 [ EBI - ARRAY_EXPRESS ]   ZBTB9 [ SEEK ]   ZBTB9 [ MEM ]
Gene Expression Viewer (FireBrowse)ZBTB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221504
GTEX Portal (Tissue expression)ZBTB9
Human Protein AtlasENSG00000213588-ZBTB9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C00
Splice isoforms : SwissVarQ96C00
PhosPhoSitePlusQ96C00
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZBTB9
DMDM Disease mutations221504
Blocks (Seattle)ZBTB9
SuperfamilyQ96C00
Human Protein Atlas [tissue]ENSG00000213588-ZBTB9 [tissue]
Peptide AtlasQ96C00
HPRD15695
IPIIPI00060141   
Protein Interaction databases
DIP (DOE-UCLA)Q96C00
IntAct (EBI)Q96C00
FunCoupENSG00000213588
BioGRIDZBTB9
STRING (EMBL)ZBTB9
ZODIACZBTB9
Ontologies - Pathways
QuickGOQ96C00
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZBTB9
Atlas of Cancer Signalling NetworkZBTB9
Wikipedia pathwaysZBTB9
Orthology - Evolution
OrthoDB221504
GeneTree (enSembl)ENSG00000213588
Phylogenetic Trees/Animal Genes : TreeFamZBTB9
HOVERGENQ96C00
HOGENOMQ96C00
Homologs : HomoloGeneZBTB9
Homology/Alignments : Family Browser (UCSC)ZBTB9
Gene fusions - Rearrangements
Fusion : QuiverZBTB9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZBTB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZBTB9
dbVarZBTB9
ClinVarZBTB9
1000_GenomesZBTB9 
Exome Variant ServerZBTB9
ExAC (Exome Aggregation Consortium)ENSG00000213588
GNOMAD BrowserENSG00000213588
Varsome BrowserZBTB9
Genetic variants : HAPMAP221504
Genomic Variants (DGV)ZBTB9 [DGVbeta]
DECIPHERZBTB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZBTB9 
Mutations
ICGC Data PortalZBTB9 
TCGA Data PortalZBTB9 
Broad Tumor PortalZBTB9
OASIS PortalZBTB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZBTB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZBTB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZBTB9
DgiDB (Drug Gene Interaction Database)ZBTB9
DoCM (Curated mutations)ZBTB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZBTB9 (select a term)
intoGenZBTB9
Cancer3DZBTB9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZBTB9
MedgenZBTB9
Genetic Testing Registry ZBTB9
NextProtQ96C00 [Medical]
TSGene221504
GENETestsZBTB9
Target ValidationZBTB9
Huge Navigator ZBTB9 [HugePedia]
snp3D : Map Gene to Disease221504
BioCentury BCIQZBTB9
ClinGenZBTB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221504
Chemical/Pharm GKB GenePA134895172
Clinical trialZBTB9
Miscellaneous
canSAR (ICR)ZBTB9 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZBTB9
EVEXZBTB9
GoPubMedZBTB9
iHOPZBTB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:38:53 CEST 2018

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