Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC2HC1A (zinc finger, C2HC-type containing 1A)

Identity

Alias_namesC8orf70
FAM164A
chromosome 8 open reading frame 70
family with sequence similarity 164, member A
Alias_symbol (synonym)CGI-62
Other alias
HGNC (Hugo) ZC2HC1A
LocusID (NCBI) 51101
Atlas_Id 75875
Location 8q21.12  [Link to chromosome band 8q21]
Location_base_pair Starts at 79578282 and ends at 79631997 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGAP1 (2q37.2) / ZC2HC1A (8q21.12)MTSS1 (8q24.13) / ZC2HC1A (8q21.12)ZC2HC1A (8q21.12) / GSS (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC2HC1A   24277
Cards
Entrez_Gene (NCBI)ZC2HC1A  51101  zinc finger, C2HC-type containing 1A
AliasesC8orf70; CGI-62; FAM164A
GeneCards (Weizmann)ZC2HC1A
Ensembl hg19 (Hinxton)ENSG00000104427 [Gene_View]  chr8:79578282-79631997 [Contig_View]  ZC2HC1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000104427 [Gene_View]  chr8:79578282-79631997 [Contig_View]  ZC2HC1A [Vega]
ICGC DataPortalENSG00000104427
TCGA cBioPortalZC2HC1A
AceView (NCBI)ZC2HC1A
Genatlas (Paris)ZC2HC1A
WikiGenes51101
SOURCE (Princeton)ZC2HC1A
Genetics Home Reference (NIH)ZC2HC1A
Genomic and cartography
GoldenPath hg19 (UCSC)ZC2HC1A  -     chr8:79578282-79631997 +  8q21.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZC2HC1A  -     8q21.12   [Description]    (hg38-Dec_2013)
EnsemblZC2HC1A - 8q21.12 [CytoView hg19]  ZC2HC1A - 8q21.12 [CytoView hg38]
Mapping of homologs : NCBIZC2HC1A [Mapview hg19]  ZC2HC1A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151820 AK024711 AK094296 AK313723 BC009074
RefSeq transcript (Entrez)NM_016010
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)ZC2HC1A
Cluster EST : UnigeneHs.271876 [ NCBI ]
CGAP (NCI)Hs.271876
Alternative Splicing GalleryENSG00000104427
Gene ExpressionZC2HC1A [ NCBI-GEO ]   ZC2HC1A [ EBI - ARRAY_EXPRESS ]   ZC2HC1A [ SEEK ]   ZC2HC1A [ MEM ]
Gene Expression Viewer (FireBrowse)ZC2HC1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51101
GTEX Portal (Tissue expression)ZC2HC1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GY0
Splice isoforms : SwissVarQ96GY0
PhosPhoSitePlusQ96GY0
Domains : Interpro (EBI)ZC2HC1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZC2HC1A
DMDM Disease mutations51101
Blocks (Seattle)ZC2HC1A
SuperfamilyQ96GY0
Human Protein AtlasENSG00000104427
Peptide AtlasQ96GY0
HPRD13039
IPIIPI00329753   IPI00984860   
Protein Interaction databases
DIP (DOE-UCLA)Q96GY0
IntAct (EBI)Q96GY0
FunCoupENSG00000104427
BioGRIDZC2HC1A
STRING (EMBL)ZC2HC1A
ZODIACZC2HC1A
Ontologies - Pathways
QuickGOQ96GY0
Ontology : AmiGOprotein binding  metal ion binding  
Ontology : EGO-EBIprotein binding  metal ion binding  
NDEx NetworkZC2HC1A
Atlas of Cancer Signalling NetworkZC2HC1A
Wikipedia pathwaysZC2HC1A
Orthology - Evolution
OrthoDB51101
GeneTree (enSembl)ENSG00000104427
Phylogenetic Trees/Animal Genes : TreeFamZC2HC1A
HOVERGENQ96GY0
HOGENOMQ96GY0
Homologs : HomoloGeneZC2HC1A
Homology/Alignments : Family Browser (UCSC)ZC2HC1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC2HC1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC2HC1A
dbVarZC2HC1A
ClinVarZC2HC1A
1000_GenomesZC2HC1A 
Exome Variant ServerZC2HC1A
ExAC (Exome Aggregation Consortium)ZC2HC1A (select the gene name)
Genetic variants : HAPMAP51101
Genomic Variants (DGV)ZC2HC1A [DGVbeta]
DECIPHER (Syndromes)8:79578282-79631997  ENSG00000104427
CONAN: Copy Number AnalysisZC2HC1A 
Mutations
ICGC Data PortalZC2HC1A 
TCGA Data PortalZC2HC1A 
Broad Tumor PortalZC2HC1A
OASIS PortalZC2HC1A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZC2HC1A
BioMutasearch ZC2HC1A
DgiDB (Drug Gene Interaction Database)ZC2HC1A
DoCM (Curated mutations)ZC2HC1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC2HC1A (select a term)
intoGenZC2HC1A
Cancer3DZC2HC1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC2HC1A
Genetic Testing Registry ZC2HC1A
NextProtQ96GY0 [Medical]
TSGene51101
GENETestsZC2HC1A
Huge Navigator ZC2HC1A [HugePedia]
snp3D : Map Gene to Disease51101
BioCentury BCIQZC2HC1A
ClinGenZC2HC1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51101
Chemical/Pharm GKB GenePA162386952
Clinical trialZC2HC1A
Miscellaneous
canSAR (ICR)ZC2HC1A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC2HC1A
EVEXZC2HC1A
GoPubMedZC2HC1A
iHOPZC2HC1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:08 CET 2017

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